PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G32390.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 270aa    MW: 28414.8 Da    PI: 7.9063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G32390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-0598120123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ CgksFs+   L  H  +H
  OMERI03G32390.1  98 FKCSVCGKSFSSYQALGGHKTSH 120
                      89**********99998888777 PP
2zf-C2H2130.00031167189123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C k F++   L  H r+H
  OMERI03G32390.1 167 HRCSICQKEFPTGQALGGHKRKH 189
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-498120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004698120IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-1298121IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-1098120No hitNo description
PROSITE profilePS5015712.0398125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-10162189No hitNo description
PfamPF139125.2E-12166191IPR007087Zinc finger, C2H2
SMARTSM003550.028167189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078167189IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSSASSMEAL HAAVLKEEEQ QQHEVEEAAV VTSSSATSGE EGGHLPQGWA KRKRSRRQRS  60
EEENLALCLL MLARGGHHRV QAPPPLSASA PPPAGAEFKC SVCGKSFSSY QALGGHKTSH  120
RVKLPTPPAA PVLVPAPVAA LLPSAEDREP ATSSTAASSD GTTNRVHRCS ICQKEFPTGQ  180
ALGGHKRKHY DGGVGASAGA SSTELLATVA AESEVGSSGN GHSATRAFDL NLPAVPEFVW  240
RPCSKGKKMW DDEEEVQSPL AFKKPRLLTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0907130.0AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633313.11e-139zinc finger protein 1
SwissprotQ424301e-117ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0D7920.0A0A0E0D792_9ORYZ; Uncharacterized protein
STRINGOMERI03G31660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-29salt tolerance zinc finger