PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G32500.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 350aa MW: 35671.3 Da PI: 9.803

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G32500.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.3e-38	65	122	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + OMERI03G32500.1 65 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 122 66789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.5E-32	67	121	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-24	68	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDQLKGASAL NHASLPVVLQ PIVSNPSPTS SSSTSSRSSA QATQQRSSSA TSSPHGGQGG 60 GAAEQAPLRC PRCNSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKP 120 RPMPAPVAKP PMSCKAVPPL GLGVGVGGGP VSWASGQQAA TAHLMALLNS ARGVQGHGGS 180 NVHRLLGLDT MGHLQILPGA PNAGAGTAAS LWPQSAPRPV TPPPHMDSQL GMGTLGHHDV 240 LSSLGLKLPS SASSSPAASY YSDQLHAVVS NAGRAQAPYD VASASLPCTT AVTSLPSALS 300 SVSAAAPTSN TVGMDLPPVS LAAPEMQYWN GPAAMSVPWP DLPTPNGAFP

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDQLKGASAL NHASLPVVLQ PIVSNPSPTS SSSTSSRSSA QATQQRSSSA TSSPHGGQGG  60
GAAEQAPLRC PRCNSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKP  120
RPMPAPVAKP PMSCKAVPPL GLGVGVGGGP VSWASGQQAA TAHLMALLNS ARGVQGHGGS  180
NVHRLLGLDT MGHLQILPGA PNAGAGTAAS LWPQSAPRPV TPPPHMDSQL GMGTLGHHDV  240
LSSLGLKLPS SASSSPAASY YSDQLHAVVS NAGRAQAPYD VASASLPCTT AVTSLPSALS  300
SVSAAAPTSN TVGMDLPPVS LAAPEMQYWN GPAAMSVPWP DLPTPNGAFP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC099043	0.0	AC099043.6 Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence.
GenBank	AK063380	0.0	AK063380.1 Oryza sativa Japonica Group cDNA clone:001-114-F11, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629418.1	0.0	dof zinc finger protein 4-like
TrEMBL	A0A0E0D7B4	0.0	A0A0E0D7B4_9ORYZ; Uncharacterized protein
STRING	OMERI03G31790.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-30	Dof family protein