PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G32810.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 162aa MW: 17611 Da PI: 11.9134

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G32810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.9	2.4e-14	49	98	1	50
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e+e++r+rrk +NR++ArrsR+RK++++eeL+ +++ L aeN++L+ +l OMERI03G32810.1 49 EEERRRQRRKVSNRLSARRSRARKQQRLEELRGESARLRAENRELAARLH 98 7899*****************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-10	45	99	No hit	No description
SMART	SM00338	1.0E-9	48	113	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-9	49	98	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.887	51	102	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.37E-8	53	100	No hit	No description
PROSITE pattern	PS00036	0	56	71	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MTSGFGFTPW AADTCPTLEQ LMAASSSPSP SSSLDDNAAA AENGEVEEEE ERRRQRRKVS 60 NRLSARRSRA RKQQRLEELR GESARLRAEN RELAARLHAV ARHGLAARCQ NARLRAEAAA 120 LARRLLALQR LARGRHMMIT ASPPPPPPTA PGAAAVLASL MA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	72	RRSRARKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC107207	0.0	AC107207.9 Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence.
GenBank	AC133450	0.0	AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630261.1	3e-43	ocs element-binding factor 1
TrEMBL	A0A0E0D7G8	1e-107	A0A0E0D7G8_9ORYZ; Uncharacterized protein
STRING	OMERI03G32130.1	1e-108	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13845	24	29