PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G32870.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 364aa    MW: 39705.6 Da    PI: 6.7224
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G32870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-092753102055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps+ e+  LA+ +gL+++q+ +WF N+R ++
  OMERI03G32870.1 275 YKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRH 310
                      5679*****************************885 PP
2ELK37.55.1e-13230251122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      +LKhqLlrKY+g+Lg+L+q Fs
  OMERI03G32870.1 230 QLKHQLLRKYGGSLGDLRQVFS 251
                      59*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.8E-1279140IPR005540KNOX1
PfamPF037907.3E-1680136IPR005540KNOX1
SMARTSM012567.2E-26151203IPR005541KNOX2
PfamPF037911.2E-19161201IPR005541KNOX2
SMARTSM011882.3E-5230251IPR005539ELK domain
PfamPF037893.1E-8230248IPR005539ELK domain
PROSITE profilePS512139.324230250IPR005539ELK domain
PROSITE profilePS5007112.503250313IPR001356Homeobox domain
SMARTSM003891.2E-11252317IPR001356Homeobox domain
SuperFamilySSF466892.35E-18252317IPR009057Homeodomain-like
CDDcd000861.24E-13253313No hitNo description
Gene3DG3DSA:1.10.10.601.0E-26255313IPR009057Homeodomain-like
PfamPF059207.4E-17270309IPR008422Homeobox KN domain
PROSITE patternPS000270288311IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MESFASLAGG GSSSTTARLP ELISPENPDH ISPTPLLYQL LAGPESSAQQ HGHGHHHGGG  60
GGAAAAAVQG QVSPAGAEAA VKAEIMSHPQ YSALLAAYLG CKKIQTTTRH VLTKLTAVPD  120
VGAPPDVLTK LTAVPAAQQL DEADGHPRRR HEPQRDDDPD QLDQFMDAYC SMLTRYREEL  180
ERPIQEAAEF FSRVETQLDS LAESNCEGTG SSEEEQDTSC PEEIDPSDKQ LKHQLLRKYG  240
GSLGDLRQVF SKRTKKGKLP KEARQKLLHW WELHYKWPYP SEMEKMTLAQ TTGLDQKQIN  300
NWFINQRKRH WKPTPVAGTA FPTMEAAGGG FRHSGHGGGL AAAAALPLYM GKPFVVDGMY  360
RLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288840.0AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds.
GenBankAK1072960.0AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879466.10.0homeobox protein knotted-1-like 8 isoform X1
SwissprotQ10ED20.0KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A0E0D7H40.0A0A0E0D7H4_9ORYZ; Uncharacterized protein
STRINGOBART03G35680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-67KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]