PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G32960.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 809aa    MW: 88512.8 Da    PI: 8.4444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G32960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07143185347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E++ + +a ++ G++ +++I  +++  +   q++++++ +
  OMERI03G32960.2 143 AWTRQEEQSFFNALRLEGKN-FEKITLHVQ-SKNKDQVRHYYYRL 185
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_01364_A15.763257IPR023676Ribosomal protein S14, type Z, archaeal
PfamPF002532.1E-15754IPR001209Ribosomal protein S14
PROSITE profilePS5129312.236139190IPR017884SANT domain
SMARTSM007174.5E-5140188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-4143192IPR009057Homeodomain-like
SuperFamilySSF466897.8E-9143190IPR009057Homeodomain-like
PfamPF002491.4E-5143185IPR001005SANT/Myb domain
CDDcd001672.85E-5143186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005634Cellular Componentnucleus
GO:0015935Cellular Componentsmall ribosomal subunit
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MGHSNVWNSH PKNYGPGSRV CRVCGNPHGL IRKYGLMCCR QCFRSNAKDI GFIKVGSLEL  60
GSFTALGPKF PSAAHRLSLH LTSSGGEHAL ASSPSHSRPP RAGLDPEATP PASIASRKIG  120
GSAELYAPSE VCLCREADRQ WAAWTRQEEQ SFFNALRLEG KNFEKITLHV QSKNKDQVRH  180
YYYRLVRRMK KLLGPEFSLD AKNSKDIVAA MLCWWSLLEK FSCSASKLHL KPRRFKTFVE  240
ALGNQLLKDR NKTRKKCPRG DVCLSSSSPI LNRTPGNESS SVKLLPVDVS NGSKVASSKG  300
AVFKRGAEPN SNNKSGSTKG DLSATITVKQ KKRAGGGVAS AAYRKWERDA MAGPGTNHMN  360
EADKQAPAKL KLQLFPINEA TQKALEKDEH NPHLELTVSA RKKISSVLEH LNRKWGSSNI  420
ASGELLLFPY CANQEDLATY QRWTTRDTVV VADVFLSVNS PPVFRLRYGW FSLAELEGGS  480
GISSTHFKNC MIPEDIHAKS PSEACVQKDG TFLSSCAPDE HLCNSKDRSA LFLAMTFSTG  540
KSAKGQELHS DFPTSWFSRQ KQEKVSTNQA NLGMDCAIIS EGEWADTLTD ISVGYLLTEA  600
SVGTNTDCPG TAIAKNTLFL ENPCSYDSFD AAVALHASRH KTVEQPALAS HSTIWGAEET  660
CDEFSFNLAA SRKQESSNTS ASSSPDSDSG VLPSTSQGFQ GFLQDLAGAK VADNPCMDDG  720
KHMEALCANS PPRSKSDSGL KHQSLADLYW ADSLGPLDLE LPSVRYQAED LLLGDSQNSW  780
NRMMVNSLDA FRNLSFFMAD KNDSIPSIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Bd2e-3215415440S ribosomal protein S14
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0651130.0AK065113.1 Oryza sativa Japonica Group cDNA clone:J013001O04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632482.10.0TSL-kinase interacting protein 1 isoform X1
TrEMBLA0A0E0D7I40.0A0A0E0D7I4_9ORYZ; Uncharacterized protein
STRINGORUFI03G37210.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-140TSL-kinase interacting protein 1