PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G34570.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 604aa    MW: 66284.4 Da    PI: 10.5827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G34570.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.5e-08144188554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  OMERI03G34570.3 144 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 188
                      99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-14137198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-8137193No hitNo description
PROSITE profilePS5088815.77139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-14141199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5144188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF101531.9E-26325431IPR019310rRNA-processing protein Efg1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006364Biological ProcessrRNA processing
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAGQQPQQQG PPEDDFFDQF FSLTSSFPGA APGGRAAGDQ PFSLALSLDA AAAAEASGSG  60
KRLGVGDDAE GGGSKADRET VQLTGLFPPV FGGGGVQPPN LRPTPPTQVF HPQQSKQGGA  120
AVGPQPPAPR PKVRARRGQA TDPHSIAERL RRERIAERMR ALQELVPNTN KTDRAAMLDE  180
ILDYVKFLRL QVKVLSMSRL GGAGAVAQLV ADIPLSVKGE ASDSGGNQQI WEKWSTDGTE  240
RQVAKLMEED IGAAMQFLQS KALCMMPISL AMAIYDTQQT QDGQPAMAHG RAAAVRRPKS  300
SSASSAGAAA ERKRKRAAAA KTVSLKNQIR STERLLRKDL PNDIRVAQEK KLEELKRQQE  360
LQNQLAIQRT VQLRDRKIKF FERRKIERMI RRLEKQQRSN ADDASNKLSK LKEDLEYVRF  420
FPKNEKYVSL FSGGNTPDML EKRNKWRKQI KENLMAAAEN GKDLEETASD DDTVDVSDDD  480
FFMSGSSSDE EADDEWTDKS AKEPASSASG KAASGMSSDE KNQRQRDARV LMPPPRSLAP  540
NRTRPGVKHV LSSSSNTSNS TSGGTFKNRR AANQPGDHNS NLSSNSDAHK PRRKRRHRKK  600
KKLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0616480.0AK061648.1 Oryza sativa Japonica Group cDNA clone:001-036-B12, full insert sequence.
GenBankAK0988760.0AK098876.1 Oryza sativa Japonica Group cDNA clone:J013001D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628282.10.0rRNA-processing protein efg1
TrEMBLA0A0E0D8770.0A0A0E0D877_9ORYZ; Uncharacterized protein
STRINGOS03T0797700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP666622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-50bHLH family protein