PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G35820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 428aa    MW: 46602.1 Da    PI: 7.681
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G35820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17115164155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  OMERI03G35820.1 115 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 164
                      78*******************......55************************998 PP
2AP2378.3e-12207251149
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaa 49 
                      s+++GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+aai++
  OMERI03G35820.1 207 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAAIRF 251
                      79********.7******...5...334336**********99*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9115164IPR001471AP2/ERF domain
CDDcd000181.25E-11115174No hitNo description
SuperFamilySSF541715.3E-16115173IPR016177DNA-binding domain
SMARTSM003802.5E-31116178IPR001471AP2/ERF domain
PROSITE profilePS5103217.622116172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17116173IPR001471AP2/ERF domain
PfamPF008471.7E-7207251IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-11207261IPR016177DNA-binding domain
CDDcd000189.07E-21207263No hitNo description
PROSITE profilePS5103210.376208261IPR001471AP2/ERF domain
SMARTSM003801.8E-24208267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-9208261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVLDLNVESP EGSGTSSSSV LNSGDAGGGG AGGGLFRFDL LASSPDDDEC SGEQHQLPAA  60
SGIVTRQLLP PPPPAAPSPA PAWQPPRRAA EDVALAQRAP VVAKKTRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGLEADIN FNLSDYEDDL  180
KQMRNWTKEE FVHILRRQST GFARGSSKFR GVTLHKCGRW EARMGQLLGK KYIYLGLFDT  240
EVEAARAAIR FNGREAVTNF EPASYNVDAL PDAGNEAIVD GDLDLDLRIS QPNARDSKSD  300
VATTGLQFTC DSPESSNITV HQPMGSSPQW TVHHQSTPLP PQHQRLYPSH CLGFLPNLQE  360
RPMDRRPELG PVPFPTQAWQ MQAPSHLPLL HAAASSGFSA GAGAGVAAAT RRQPPFPADH  420
PFYFPPTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8365220.0CT836522.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA250P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628370.10.0floral homeotic protein APETALA 2 isoform X2
SwissprotQ84TB50.0AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0E0D8T00.0A0A0E0D8T0_9ORYZ; Uncharacterized protein
STRINGOMERI03G35370.20.0(Oryza meridionalis)
STRINGOS03T0818800-000.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-85AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]