PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G35820.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 413aa    MW: 45145.4 Da    PI: 7.7046
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G35820.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.52.9e-07115136122
              AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                      s+y+GV++++++grW+++I+ +
  OMERI03G35820.4 115 SQYRGVTFYRRTGRWESHIWAY 136
                      78*****************984 PP
2AP242.12.1e-13188238155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ +++g
  OMERI03G35820.4 188 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDRAAIRFNG 238
                      79********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-5115154IPR016177DNA-binding domain
SMARTSM003806.1E-7116159IPR001471AP2/ERF domain
PfamPF008471.1E-8188238IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17188246IPR016177DNA-binding domain
CDDcd000183.83E-26188248No hitNo description
PROSITE profilePS5103216.041189246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-16189246IPR001471AP2/ERF domain
SMARTSM003806.7E-33189252IPR001471AP2/ERF domain
PRINTSPR003678.8E-6190201IPR001471AP2/ERF domain
PRINTSPR003678.8E-6228248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVLDLNVESP EGSGTSSSSV LNSGDAGGGG AGGGLFRFDL LASSPDDDEC SGEQHQLPAA  60
SGIVTRQLLP PPPPAAPSPA PAWQPPRRAA EDVALAQRAP VVAKKTRRGP RSRSSQYRGV  120
TFYRRTGRWE SHIWAYDRAA IKFRGLEADI NFNLSDYEDD LKQMRNWTKE EFVHILRRQS  180
TGFARGSSKF RGVTLHKCGR WEARMGQLLG KKYIYLGLFD TEVEAARAYD RAAIRFNGRE  240
AVTNFEPASY NVDALPDAGN EAIVDGDLDL DLRISQPNAR DSKSDVATTG LQFTCDSPES  300
SNITVHQPMG SSPQWTVHHQ STPLPPQHQR LYPSHCLGFL PNLQERPMDR RPELGPVPFP  360
TQAWQMQAPS HLPLLHAAAS SGFSAGAGAG VAAATRRQPP FPADHPFYFP PTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851130.0AY685113.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628369.10.0floral homeotic protein APETALA 2 isoform X1
SwissprotQ84TB50.0AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0E0D8T30.0A0A0E0D8T3_9ORYZ; Uncharacterized protein
STRINGOMERI03G35370.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-76AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]