PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G35880.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 144aa    MW: 14942 Da    PI: 10.3245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G35880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00164567123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  OMERI03G35880.1 45 FVCKTCSRAFPSFQALGGHRTSH 67
                     89**********99998888777 PP
2zf-C2H214.69.6e-05100122123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F     L  H+r+H
  OMERI03G35880.1 100 HECHICGQGFEMGQALGGHMRRH 122
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.1E-114569IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6814572IPR007087Zinc finger, C2H2
SMARTSM003550.514567IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.06E-74567No hitNo description
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576678.06E-795122No hitNo description
PfamPF139121.5E-10100125IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.512100127IPR007087Zinc finger, C2H2
SMARTSM003550.23100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTKHPRDGEV ISLSLSLTLG AAADGGERKK PRRGSSPAAS GSGDFVCKTC SRAFPSFQAL  60
GGHRTSHLRG RHGLALGLAA ATAKETTKKV QEKPAAAASH ECHICGQGFE MGQALGGHMR  120
RHREEAAAAA AAVHAPPVLL ELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4064330.0CU406433.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C005G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629272.11e-97zinc finger protein ZAT12
TrEMBLA0A0E0D8U12e-97A0A0E0D8U1_9ORYZ; Uncharacterized protein
STRINGOMERI03G35430.14e-98(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-15C2H2 family protein