PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G37020.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 211aa    MW: 22740.3 Da    PI: 6.7467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G37020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08128173247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+W+ eE+ + ++++++ G g+W+ I+ +    Rt+ q+ s+ qky
  OMERI03G37020.1 128 GAWSNEEHRQCLRGIEEIGAGHWTQISIEYVPSRTPIQIASHSQKY 173
                      89*************************98888************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.392076IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-62174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-52274IPR009057Homeodomain-like
PROSITE profilePS500906.6442274IPR017877Myb-like domain
CDDcd001670.006442370No hitNo description
PROSITE profilePS5129411.959122178IPR017930Myb domain
SuperFamilySSF466891.94E-13123179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-8124173IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-11125176IPR006447Myb domain, plants
SMARTSM007171.9E-4126176IPR001005SANT/Myb domain
PfamPF002496.5E-7128173IPR001005SANT/Myb domain
CDDcd001671.72E-5129169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGDLVGDGAT PSAAEPAPAA AGRWTRQKDK LLEMLVARHA ITHGQRVGGW DAIAAAFGDD  60
RTVAQVEQRY GEIAAEVRRV MEEPWDAEDP TAAAAAAAAA APVKHAAAEP GSDGGGGEGK  120
VVVEKKSGAW SNEEHRQCLR GIEEIGAGHW TQISIEYVPS RTPIQIASHS QKYFLRMAKP  180
KEDRKRKSIH DTPYHLHLPN AADAHAHQQQ Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044871e-158AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence.
GenBankAP0149591e-158AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-158CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629677.11e-111transcription factor MYBS1-like
TrEMBLA0A0E0D9971e-151A0A0E0D997_9ORYZ; Uncharacterized protein
STRINGORUFI03G41990.11e-111(Oryza rufipogon)
STRINGORGLA03G0370300.11e-111(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1818388
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-17MYB family protein