PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G37110.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 390aa MW: 42426.3 Da PI: 6.5006

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G37110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	6.9e-07	171	192	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H OMERI03G37110.1 171 FCGVCGKGFKRDANLRMHMRGH 192 6*******************98 PP
2	zf-C2H2	11.5	0.00094	294	308	6	20
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H OMERI03G37110.1 294 CGTSFSRKDKLFAHV 308 **************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.32E-5	168	195	No hit	No description
SMART	SM00355	0.011	170	192	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.697	170	197	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.3E-5	172	196	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	172	192	IPR007087	Zinc finger, C2H2
SMART	SM00355	39	224	257	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	31	262	284	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MIMSSSVDHF SNNNNNSNQA MHLEQDEDFS QMIMELCDFD ASSTTQARHG GEAAAAAAGD 60 ARAVLTYLTF LEQKIGHLRG IISSTPNPPP QIVAAELSCI VVQLVSISKN LAAARRGGDD 120 ADADAKPDGS SDADEGADGD GDGDGERAPP RGPYEVVQIE KEEILAPHVH FCGVCGKGFK 180 RDANLRMHMR GHGEEYKSAA ALAKPCGTGA PPSPSRSQAR RRFYSCPYVG CKRNREHKSF 240 QPLKTPTCVK NHYRRSHCDK SFTCRRCNVK RFSVVADLRT HEKHCGRDRW VCSCGTSFSR 300 KDKLFAHVAI FDGHSPALPP EDYDDAAASG QLPHAAGEAV SRTVDTNRFF SDGLMIKGSM 360 DDERGSLSPM GLDYCEFDGI DLFAAAAFDF

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MIMSSSVDHF SNNNNNSNQA MHLEQDEDFS QMIMELCDFD ASSTTQARHG GEAAAAAAGD  60
ARAVLTYLTF LEQKIGHLRG IISSTPNPPP QIVAAELSCI VVQLVSISKN LAAARRGGDD  120
ADADAKPDGS SDADEGADGD GDGDGERAPP RGPYEVVQIE KEEILAPHVH FCGVCGKGFK  180
RDANLRMHMR GHGEEYKSAA ALAKPCGTGA PPSPSRSQAR RRFYSCPYVG CKRNREHKSF  240
QPLKTPTCVK NHYRRSHCDK SFTCRRCNVK RFSVVADLRT HEKHCGRDRW VCSCGTSFSR  300
KDKLFAHVAI FDGHSPALPP EDYDDAAASG QLPHAAGEAV SRTVDTNRFF SDGLMIKGSM  360
DDERGSLSPM GLDYCEFDGI DLFAAAAFDF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630047.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q9C8N5	1e-100	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A0E0D9B4	0.0	A0A0E0D9B4_9ORYZ; Uncharacterized protein
STRING	ORUFI03G42070.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-92	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]