PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G00680.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 476aa    MW: 49648.9 Da    PI: 10.2144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G00680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05241263223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       C+ Cg++F+  ++L++H+   H
  OMERI04G00680.1 241 ACSQCGEVFTKADSLEHHQAIrH 263
                      6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280240263IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619240268IPR007087Zinc finger, C2H2
SuperFamilySSF563991.38E-15265473No hitNo description
Gene3DG3DSA:3.90.228.105.5E-6267474IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MALSTLLLPS SSSSSKTATA TDTSDRRRHH HHHNHTKRKK KPPPPSLSPT PRTPPPAGSG  60
SHRAMAASSK KNTKQVVVAA KNTTGHRPKK AGPAPTTPSR GAPSASAAPV SSSWEQLKSL  120
LSCRSATAAA RVHDPAAPSS ALSRLRSHGA GACGASLCAI RDVVDAASSA SAASTAAASL  180
DRDTTPLTRS SRRAHRAAAS SGGGGGGHHA SLRGLSGCYE CRAINVEPMS RRYPRPRELC  240
ACSQCGEVFT KADSLEHHQA IRHAVSELGP EDSGRNIVEI IFKSSWQKRD RPICQIDRIL  300
KVHNAARTVA RFEAYRDAVR TRCRATAARA AADGNELLRF HPAALACPLG LNGATSLCDD  360
DAACAVCAAI RHGFAPWAGA HPLGVRTTAS SGRAHDCGAA AAQQAGGCRA MLVCRVIAGR  420
VRRNGDGDGA AEEGAFDSVA GDEAASSVYG NLEELFVANP RAILPCFVVI YRVVPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12540RRRHHHHHNHTKRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2268170.0EU226817.1 Oryza sativa Japonica Group isolate E09 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268190.0EU226819.1 Oryza sativa Japonica Group isolate E11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268220.0EU226822.1 Oryza sativa Japonica Group isolate F02 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268230.0EU226823.1 Oryza sativa Japonica Group isolate F03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268240.0EU226824.1 Oryza sativa Japonica Group isolate F04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268250.0EU226825.1 Oryza sativa Japonica Group isolate F05 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268260.0EU226826.1 Oryza sativa Japonica Group isolate F06 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268270.0EU226827.1 Oryza sativa Japonica Group isolate F07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268280.0EU226828.1 Oryza sativa Japonica Group isolate F08 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268290.0EU226829.1 Oryza sativa Japonica Group isolate F09 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268310.0EU226831.1 Oryza sativa Japonica Group isolate F11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268350.0EU226835.1 Oryza rufipogon isolate G03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268390.0EU226839.1 Oryza rufipogon isolate G07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268410.0EU226841.1 Oryza rufipogon isolate G09 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268460.0EU226846.1 Oryza rufipogon isolate H02 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268470.0EU226847.1 Oryza rufipogon isolate H03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268480.0EU226848.1 Oryza rufipogon isolate H04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268490.0EU226849.1 Oryza rufipogon isolate H05 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268500.0EU226850.1 Oryza rufipogon isolate H06 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
GenBankEU2268520.0EU226852.1 Oryza rufipogon isolate H08 putative nucleic acid binding protein (Os04g02510) gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634299.10.0uncharacterized protein LOC4334944
TrEMBLA0A0E0DA350.0A0A0E0DA35_9ORYZ; Uncharacterized protein
STRINGOMERI04G00620.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-67C2H2-like zinc finger protein