PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G01290.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 198aa    MW: 21244.1 Da    PI: 6.4968
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G01290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.45.7e-082231535
                     -TT-SS-EEEEEE-ST.T---E CS
             WRKY 15 vkgsefprsYYrCtsa.gCpvk 35
                      kg+++pr+YYrCt a gCp+ 
  OMERI04G01290.1  2 AKGNPCPRAYYRCTVAvGCPAA 23
                     59*************99**985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081110.12122IPR003657WRKY domain
SMARTSM007740.006137IPR003657WRKY domain
PfamPF031061.3E-4223IPR003657WRKY domain
SuperFamilySSF1182904.32E-5223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-5223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAKGNPCPRA YYRCTVAVGC PAAVAKSSSA NAATTEMLEL LRDFSDYSSF NSDISSELER  60
LAAAVTPRLD APQVAAMDLN GGSSSSSRLT TTTPPPLLQL GRRQALPFIV PTGRCASLAT  120
VVEEISSRRA SPPWTSAAGD AVAVIPSYEN HVTEVSTCVK HSSSHTDIDR LRLSITTPFH  180
DYDVITLIDK IINPLFWC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629850.0AL662985.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DAC11e-142A0A0E0DAC1_9ORYZ; Uncharacterized protein
STRINGOGLUM09G00510.11e-136(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2342744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.17e-10WRKY family protein