PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G02090.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 349aa MW: 35521.1 Da PI: 6.1087

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G02090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H OMERI04G02090.1 245 HECSICGAEFASGQALGGHMRRH 267 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	6.9E-11	136	161	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.07E-8	136	159	No hit	No description
PROSITE profile	PS50157	10.201	137	164	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.24	137	159	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.07E-8	240	267	No hit	No description
Pfam	PF13912	1.5E-12	244	268	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.263	245	272	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	245	267	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	247	267	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGVQEEAALA AAVVKGKRSK RQRAHAAAAA VVAIAAASAT AEEEESMESS LSLSGGAAAA 60 EGSSTTSPLM TTTTTARGDE AVSGCVTEEE DMALCLMLLA SGGHGERAPD AEAVAAKEAK 120 FRSRRPADGA AAGEFVYECK TCSKCFPSFQ ALGGHRTSHK KPRLVAPPAT TEPAADDKVK 180 PAIPEAAAAA AEEKPPKPSP PRPPASRPIA TDPTVLAIPV IPKQEVLDAT NAAAIASVSK 240 QPRVHECSIC GAEFASGQAL GGHMRRHRPL IPASASSSSA VAVSVLDAVD APRQKEKSLL 300 ELDLNMPAPC DDAAAETTTS SAATSTAFAF AVSDRSPLLV PAALVGCHY

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGVQEEAALA AAVVKGKRSK RQRAHAAAAA VVAIAAASAT AEEEESMESS LSLSGGAAAA  60
EGSSTTSPLM TTTTTARGDE AVSGCVTEEE DMALCLMLLA SGGHGERAPD AEAVAAKEAK  120
FRSRRPADGA AAGEFVYECK TCSKCFPSFQ ALGGHRTSHK KPRLVAPPAT TEPAADDKVK  180
PAIPEAAAAA AEEKPPKPSP PRPPASRPIA TDPTVLAIPV IPKQEVLDAT NAAAIASVSK  240
QPRVHECSIC GAEFASGQAL GGHMRRHRPL IPASASSSSA VAVSVLDAVD APRQKEKSLL  300
ELDLNMPAPC DDAAAETTTS SAATSTAFAF AVSDRSPLLV PAALVGCHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833697	0.0	CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634434.1	1e-144	zinc finger protein ZAT5
TrEMBL	A0A0E0DAM0	0.0	A0A0E0DAM0_9ORYZ; Uncharacterized protein
STRING	OMERI04G01890.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	4e-26	C2H2 family protein