PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G02350.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 245aa MW: 25820.1 Da PI: 11.9124

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G02350.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	62.6	1.5e-19	50	154	24	130
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaaksaakskksqksaasalnlakes 114 ls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++ + + ++ +++ + + + + + ++++a+++k++ a+ ++ e+ OMERI04G02350.1 50 LSVPTAIVFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSL--DCS-FVLPNAAQLLTRRRRRPssgRPSAEQACTRKATVAAS--PGKSGEK 138 89****************************************..444.3344444444443344321144444444444444444..7777799 PP TCP 115 rakarararertrekm 130 r k r+r r +e+ OMERI04G02350.1 139 RRKTRSRCAARRAERI 154 9999999777766654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.287	21	88	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.7E-17	50	161	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MEEVVVGKER KRPRCALVGV GVGGHGGARG GRAGWRAQRR ARRTSTAKWL SVPTAIVFYD 60 IQDRLGVDQP SKAIEWLIRA AAAAIDALPS LDCSFVLPNA AQLLTRRRRR PSSGRPSAEQ 120 ACTRKATVAA SPGKSGEKRR KTRSRCAARR AERIAKLRAR REGWMPRREA STSAASGGQS 180 WIRKPSTPRS GGLCSGAGEG EGGGGGSMGE IEEDELKHGG ERSGATAGGE GRQGGGAERG 240 GGGRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-12	50	89	16	55	Putative transcription factor PCF6
5zkt_B	6e-12	50	89	16	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004314	0.0	AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0DAP9	1e-166	A0A0E0DAP9_9ORYZ; Uncharacterized protein
STRING	ORUFI07G02160.1	1e-123	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP54256	2	2