PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G02760.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 253aa    MW: 28719.4 Da    PI: 8.2741
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G02760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR331.2e-10174209439
              TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      +gC+C+kskCl   CeC ++++ C+++C+C dC N 
  OMERI04G02760.1 174 NGCRCQKSKCLVHSCECLKHEVRCTSKCQCIDCGNG 209
                      79*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163423.6671211IPR005172CRC domain
SMARTSM011140.004576124IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-497122IPR005172CRC domain
SMARTSM011143.2E-4171212IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.4E-8174208IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAAVNHGPGP APHVQGRPML VRRWSTPRGN QGPTTPGHNN GDSSTFALRV APHPHPIHPS  60
YRHCLVSSLP PHQTNNCRQS SRTRFSVILI VHMQVVRCYC PCFSAYGYCS QNCHCTNCKN  120
REYYEDFVEE RVDMIKMKNP RAFDPKIVRV QDASEIEPQS SNAVPENEQW MYANGCRCQK  180
SKCLVHSCEC LKHEVRCTSK CQCIDCGNGP RTKYDSNIGK DQSDVSGLTY EEPTMDTMQS  240
EHTLNPNKRP KYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315891e-107AL731589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence.
GenBankAP0149601e-107AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DAU40.0A0A0E0DAU4_9ORYZ; Uncharacterized protein
STRINGOMERI04G02540.21e-114(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.13e-19Tesmin/TSO1-like CXC domain-containing protein