PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G04180.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 197aa    MW: 20375.3 Da    PI: 6.6
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G04180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000214769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ F++   L  H++ H
  OMERI04G04180.1 47 YECVFCKRGFTTAQALGGHMNIH 69
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-64474No hitNo description
PROSITE profilePS5015710.994774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDMDAGSNKG SRADESVSSL GTDDHAAAPE PMSASPPPAT ATARPYYECV FCKRGFTTAQ  60
ALGGHMNIHR RDRAAKPGPG AAAPPRDAST TTVSRSVECY SQYRHLAAAT SGAAGSSSSF  120
AMYHGSTGAG EEAAAVGGPR ELSLFDAATD HGLHLGVGRR GGGGESRTPE GSEQQVAGEL  180
PERELDLELR LGRHTKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454771e-155AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149611e-155AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805746.11e-47uncharacterized protein LOC112884551
TrEMBLA0A0E0DBF11e-139A0A0E0DBF1_9ORYZ; Uncharacterized protein
STRINGOMERI04G03770.11e-139(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-10C2H2 family protein