PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G05310.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 416aa MW: 44840.6 Da PI: 9.8423

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G05310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5.1e-05	309	331	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +Cg++Fs+ L H+++H OMERI04G05310.1 309 YECRKCGTMFSSGQALGGHMKSH 331 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.87E-6	306	335	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-4	308	332	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.9E-8	309	331	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.635	309	336	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	311	331	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MAPSRISSSE SERPVGSYHF HIPRQPPRIQ AEGGKRHMII GDRRHGGTAL WRRGSMLPPS 60 LPRWGVEDGH GHVDGSSRQH PSELGSSSAL SVAIGGWIWR SAAAQAHGEV IDGGRCEDEA 120 GDHMQPPPAS SASMAMLSEE RISASGIVVR ERQLHGYGER PFLPCLATMA AKGTAREISS 180 KKIAKKDHRE VGDLTMAMLM PSWTSTGNHS SRNPTRCLEQ LPEPSKRAHS EAYGNMQLST 240 GDLIVGLHKQ ATITVPPPNI PKIGGHLTAH KNNEMTVGKG VQHTIDVSIA KEATRSLASS 300 ARQSRRGPYE CRKCGTMFSS GQALGGHMKS HNSDERWGDK RVPSAFVGSF LSFITPIDVS 360 NVSVPSSRNP HASSIPNKEE GRVLVMGAAP LNGVPKGSFR LFGENIAEAP KEEPME

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MAPSRISSSE SERPVGSYHF HIPRQPPRIQ AEGGKRHMII GDRRHGGTAL WRRGSMLPPS  60
LPRWGVEDGH GHVDGSSRQH PSELGSSSAL SVAIGGWIWR SAAAQAHGEV IDGGRCEDEA  120
GDHMQPPPAS SASMAMLSEE RISASGIVVR ERQLHGYGER PFLPCLATMA AKGTAREISS  180
KKIAKKDHRE VGDLTMAMLM PSWTSTGNHS SRNPTRCLEQ LPEPSKRAHS EAYGNMQLST  240
GDLIVGLHKQ ATITVPPPNI PKIGGHLTAH KNNEMTVGKG VQHTIDVSIA KEATRSLASS  300
ARQSRRGPYE CRKCGTMFSS GQALGGHMKS HNSDERWGDK RVPSAFVGSF LSFITPIDVS  360
NVSVPSSRNP HASSIPNKEE GRVLVMGAAP LNGVPKGSFR LFGENIAEAP KEEPME

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242186	0.0	AK242186.1 Oryza sativa Japonica Group cDNA, clone: J075161K18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611340.1	0.0	uncharacterized protein LOC4346425
TrEMBL	A0A0E0DBV4	0.0	A0A0E0DBV4_9ORYZ; Uncharacterized protein
STRING	OMERI04G04690.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16216	12	13