PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G07690.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 167aa    MW: 17517 Da    PI: 10.4646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G07690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.96.1e-1457108255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      g+ GV+++   grW AeIrd    +  k     ++g+f+ta eAa a++a  ++l+g
  OMERI04G07690.1  57 GILGVHQRT-YGRWSAEIRD----NviKGsHCLWIGTFDTALEAALAYDAVSRRLYG 108
                      678***999.8*********....443225********************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.17357116IPR001471AP2/ERF domain
SMARTSM003807.4E-1157122IPR001471AP2/ERF domain
PfamPF008473.4E-758108IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1458116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-1860116IPR001471AP2/ERF domain
CDDcd000183.29E-1560117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MMNSSSTSAV ESVTNLQART PPLPNPVAPK TGGQSEQALK LASTTAAATK KRRSKHGILG  60
VHQRTYGRWS AEIRDNVIKG SHCLWIGTFD TALEAALAYD AVSRRLYGLN AKANFAAGED  120
LPPLPPPPAP VAMPYAAPPK RPKKCNTAVP PPQAVDTPAA AAGVAWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954KKRRSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550911e-126CR855091.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0130K07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619473.14e-48ethylene-responsive transcription factor ERF023
TrEMBLA0A0E0DCR61e-117A0A0E0DCR6_9ORYZ; Uncharacterized protein
STRINGOMERI04G06800.16e-71(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-15ERF family protein