PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G09080.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 782aa    MW: 86814.4 Da    PI: 8.7934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G09080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07594635240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W  eE ell +a++++++g   +W+ +++ +g+gR+ +++
  OMERI04G09080.1 594 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 635
                      68***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.14E-20200297IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.1E-20215309IPR001623DnaJ domain
SMARTSM002712.6E-15218293IPR001623DnaJ domain
PROSITE profilePS5007618.045219301IPR001623DnaJ domain
PfamPF002261.4E-17219298IPR001623DnaJ domain
CDDcd062572.55E-13219290IPR001623DnaJ domain
PRINTSPR006254.3E-8224242IPR001623DnaJ domain
PRINTSPR006254.3E-8242257IPR001623DnaJ domain
PRINTSPR006254.3E-8273293IPR001623DnaJ domain
PROSITE patternPS006360278297IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.959588643IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-4589635IPR009057Homeodomain-like
SMARTSM007171.4E-5592645IPR001005SANT/Myb domain
PfamPF002494.3E-6594635IPR001005SANT/Myb domain
SuperFamilySSF466898.16E-7594637IPR009057Homeodomain-like
CDDcd001675.43E-5595635No hitNo description
SMARTSM007173.3E-6722774IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-7723771IPR009057Homeodomain-like
CDDcd001672.54E-5725767No hitNo description
Gene3DG3DSA:1.10.10.607.4E-4725767IPR009057Homeodomain-like
PROSITE profilePS500906.098726767IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MPPAQIPRGI SPPPLLSNPS RPQASHTATT PPPPPPPAAR TPAFSLPFPP SPSPRFLDGG  60
GSLSTSGRLP APAYPPSNHL SSGARRLDDE QAGAREAAAN QAADREILGE EEQFLLFDRG  120
RSPLIPSARI DQAISVQEII DGAPLYVSSN CLPIKACKYE PAGHSFHAAA LKLLGLGEQE  180
DTETDDRSVS SDDKSQDFSA SSDTFSSKGK KKSGSQQQDH YALLGLGHLR FLATEDQIRK  240
SYRDMALKHH PDKQASLILA EATEEAKQAK KDEIESHFKA IQEAYEVLID PTKRRIFDST  300
DEFDDDIPTD CAPQDFYKVF GPAFMRNGRW SVNQTIPSLG DDATPVEEVD KFYNFWYNFK  360
SWREFPHADE YDLEQAESRE HKRWMERQNA KLQEKAKKVE YARVRTLVDN AYKKDPRIQR  420
RKEEEKAEKQ RRKEAKYLAK KMQEEEAAKA AEEERKRKEE EAKRAAEAAL NQKRLKEKEK  480
KLLRKEKTRL RNLVAPVVAE SHFSLSEDDV ETACSSLDME RLKKLCDSME NKDTTEKARL  540
LRGALSKEGS SGTSNEGKKI QANGADGSKA KSTSSGEKVT QGNTLSNYEK KEEKPWGREE  600
IELLRKAIQK YPKGTSRRWE VVSEFIGTGR SVEEILKATK TVLLQKPDST KAFDSFLEKR  660
KPAPSIASPL SVRTETVGLP TEEASGDASS KAPAQPASSK TSDEKAPAPA PVSNGTPSGT  720
ADPEAWSEAQ VLALVQALKA FPKDASQRWE RVAAAVPGKT MVQCKKKVAE MQKNFRSKKG  780
AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1931541920124Zuotin
5dje_B3e-1931541920124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454475RKRKEEEAKRAAEAALNQKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550890.0CR855089.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0135C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652199.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0E0DD850.0A0A0E0DD85_9ORYZ; Uncharacterized protein
STRINGOMERI04G08000.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain