PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G09500.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 192aa MW: 20347.2 Da PI: 6.9226

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G09500.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.7	3.2e-11	72	146	4	84
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 ++ +s+v ++v+p++fa + ++ t + +grsW +++ ++++ l++GW++F+ +n+L+ gD +vF+l OMERI04G09500.1 72 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFEL 146 677899999999******433...3333.44446789****..88888899********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.02E-14	66	147	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.5E-15	66	170	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.63E-12	67	169	No hit	No description
PROSITE profile	PS50863	12.153	69	171	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-8	70	146	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MASDPTELRH SSPECSGDAG AEDPAAAAAA LDAAEKSGGD IAEAAPPRPP EPEKVAHHGV 60 LPLLGKPYFT CIMCKSHVQP PFQVVVPRSF APLLPSRTTP ATLSWRGRSW GMRFTGGRLI 120 QRLEAGWRGF AVDNDLRLGD GCVFELLLVV GGGGGGEQER VEFRVQVLRA EIPARIRGRA 180 GGYTSAAPIV ID

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119999	0.0	AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635251.1	1e-99	B3 domain-containing protein Os04g0386900
Swissprot	Q7XLP4	1e-100	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A0E0DDE4	1e-135	A0A0E0DDE4_9ORYZ; Uncharacterized protein
STRING	OMERI04G08440.1	1e-118	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]