PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G09520.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28033 Da    PI: 10.6004
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G09520.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.31.1e-141161250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyeys 50
                     rie+  +r + f kR++g+ KKAeEL  LCda v  +++s   +g+l+ ++
  OMERI04G09520.2 11 RIEDRVRRGICFRKRLAGLEKKAEELAMLCDAHVGFVVLScsGDGRLHHFA 61
                     8*********************************88777511678898886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-12263IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.194253IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-11424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-17481IPR002100Transcription factor, MADS-box
PfamPF003196.9E-181160IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-112439IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-113960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAMLC DAHVGFVVLS CSGDGRLHHF  60
AAPANIENIV ERYENSLTAQ KGVHGRRILE KTKGKDFHVP KETTDKGPGK DFHVPKETTD  120
KGSNDDDMRS IDETDISTLN MDQLSQIERL LEDELRWTRE RKVVVDRSAR LQKKVRGRAA  180
IVEVEGGSME IPKYLGRRRR GGGGGGGGAT APDYAVGPQH AVLGRRSSAV NRRDKKVIGE  240
KLEILRAPPA AV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117961e-157AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.14e-81truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A0E0DDE70.0A0A0E0DDE7_9ORYZ; Uncharacterized protein
STRINGOMERI04G08460.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-17AGAMOUS-like 79