PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G09520.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 300aa    MW: 33356.9 Da    PI: 10.4925
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G09520.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.91.5e-141161250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyeys 50
                     rie+  +r + f kR++g+ KKAeEL  LCda v  +++s   +g+l+ ++
  OMERI04G09520.4 11 RIEDRVRRGICFRKRLAGLEKKAEELAMLCDAHVGFVVLScsGDGRLHHFA 61
                     8*********************************88777511678898886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-12263IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.194253IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-10424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-14464IPR002100Transcription factor, MADS-box
PfamPF003199.2E-181160IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-102439IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-103960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAMLC DAHVGFVVLS CSGDGRLHHF  60
AAPAKSSISH PSRLPSSLFP ATRGCHRFNH RLTAGVLRQR GLFHHRPPGC SWATGLEYVG  120
LGGDRHSRTT FLGGAPPSGG AAPSSVGTRE LQRIRSIENI VERYENSLTA QKGVHGRRIL  180
EKRKSKDFHV PKETIDKGPI NDDMRPIDEK DISTLNMDQI SQIEILLEDE LRWTRARKKQ  240
VAGGSQQSAE EMEVVLRHRL SLGTGDRDDS GGDRAAEQLH RTPLPAVDLN VPCRDAGQLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-113CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.12e-61truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A0E0DDE90.0A0A0E0DDE9_9ORYZ; Uncharacterized protein
STRINGOMERI04G08470.18e-92(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.17e-14AGAMOUS-like 21