PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G09520.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 313aa    MW: 34697.1 Da    PI: 9.8706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G09520.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-141161250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyeys 50
                     rie+  +r + f kR++g+ KKAeEL  LCda v  +++s   +g+l+ ++
  OMERI04G09520.5 11 RIEDRVRRGICFRKRLAGLEKKAEELAMLCDAHVGFVVLScsGDGRLHHFA 61
                     8*********************************88777511678898886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-12263IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.194253IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-14464IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-10424IPR002100Transcription factor, MADS-box
PfamPF003199.8E-181160IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-102439IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-103960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAMLC DAHVGFVVLS CSGDGRLHHF  60
AAPAKSSISH PSRLPSSLFP ATRGCHRFNH RLTAGVLRQR GLFHHRPPGC SWATGLEYVG  120
LGGDRHSRTT FLGGAPPSGG AAPSSVGTRE LQRIRSIENI VERYENSLTA QKGVHGRRIL  180
EKTKGKDFHV PKETTDKGPG KDFHVPKETT DKGSNDDDMR SIDETDISTL NMDQLSQIER  240
LLEDELRWTR ERKVAGGSQQ SAEEMEVVLR HRLSLGTGDR DDSGGDRAAE QLHRTPLPAV  300
DLNVPCRDAG QLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-113CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637118.12e-46truncated transcription factor CAULIFLOWER D-like isoform X2
TrEMBLA0A0E0DDF00.0A0A0E0DDF0_9ORYZ; Uncharacterized protein
STRINGOPUNC04G08530.11e-80(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.18e-14AGAMOUS-like 21