PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G09520.6
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 268aa    MW: 29135.8 Da    PI: 8.5118
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G09520.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.57.2e-1369111244
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 
                      rie+  +r + f kR++g  KKAeEL vLCda v  +++s +g
  OMERI04G09520.6  69 RIEDRVRRGICFRKRLAGPEKKAEELAVLCDAHVGFVVLSCSG 111
                      8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-1060122IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.73160111IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-106282IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-1562137IPR002100Transcription factor, MADS-box
PfamPF003194.3E-1569111IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-108297IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-1097118IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAGPAESGKA AATATARGSG ADAERRRVTA MAAARGGASA SPGSGASESD WEVGIGRRMG  60
RRGRVVLRRI EDRVRRGICF RKRLAGPEKK AEELAVLCDA HVGFVVLSCS GDDANPHHFA  120
APATIENIVE RYEHPQAAQK GVHGRCILQK RKSKDFHVPK ETIDKGPIND DMRPIDEKDI  180
STLNMDQISQ IEILLEDELR WTRARKKQVA GGSQQSAEEM EVVLRHRLSL GTGDRDDSGG  240
DRAAEQLHRT PLPAVDLNVP CRDAGQLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550971e-118CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.11e-111truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A0E0DDF10.0A0A0E0DDF1_9ORYZ; Uncharacterized protein
STRINGOMERI04G08470.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.12e-13AGAMOUS-like 79