PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G09520.8
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 131aa    MW: 13760.5 Da    PI: 10.6969
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G09520.8genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.32e-1369111244
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 
                      rie+  +r + f kR++g  KKAeEL vLCda v  +++s +g
  OMERI04G09520.8  69 RIEDRVRRGICFRKRLAGPEKKAEELAVLCDAHVGFVVLSCSG 111
                      8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-1060122IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.73160111IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-1461112IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-116282IPR002100Transcription factor, MADS-box
PfamPF003191.2E-1569111IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-118297IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-1197118IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAGPAESGKA AATATARGSG ADAERRRVTA MAAARGGASA SPGSGASESD WEVGIGRRMG  60
RRGRVVLRRI EDRVRRGICF RKRLAGPEKK AEELAVLCDA HVGFVVLSCS GDDANPHHFA  120
APATHLELQF H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550971e-119CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DDF33e-87A0A0E0DDF3_9ORYZ; Uncharacterized protein
STRINGOMERI04G08470.12e-80(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-09AGAMOUS-like 21