PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G10270.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family S1Fa-like
Protein Properties Length: 162aa    MW: 17649.6 Da    PI: 11.092
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G10270.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA136.18.2e-432695270
             S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     +v+++e+ kGlnPG+ivl+vv+++ll+f+vgny+lyvyaqk+lPPrkkkPvskkk+kreklkqGv++PG+
  OMERI04G10270.2 26 NVVIEEVnKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGD 95
                     67788888************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190131.0E-182795No hitNo description
PfamPF046899.2E-403195IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MHRVTICWVF WSRSAMADQF ADSANNVVIE EVNKGLNPGM IVLIVVATFL LLFFVGNYAL  60
YVYAQKTLPP RKKKPVSKKK MKREKLKQGV SAPGDSATAS LGIHRSDRPP HISPSPPTPA  120
RVIANNFPTF HGELTATPRP AQLVSSKPRL AGAVSPSLPP PN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212051e-141AK121205.1 Oryza sativa Japonica Group cDNA clone:J023087P18, full insert sequence.
GenBankBT1310311e-141BT131031.1 Oryza sativa clone RRlibC00345 mRNA sequence.
GenBankCT8339931e-141CT833993.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z77, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DDS41e-114A0A0E0DDS4_9ORYZ; Uncharacterized protein
STRINGOGLUM04G11330.12e-54(Oryza glumipatula)
STRINGORUFI04G12840.12e-54(Oryza rufipogon)
STRINGONIVA04G09610.12e-54(Oryza nivara)
STRINGOBART04G11650.13e-54(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.12e-11S1FA-like DNA-binding protein