PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G10280.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family S1Fa-like
Protein Properties Length: 92aa    MW: 10144.2 Da    PI: 10.7318
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G10280.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA130.83.6e-412592470
             S1FA  4 akvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                      ++e+ kGlnPG ivllvv++ll++f+vgny+ly+yaqk+lPPrkkkPvskkklkreklkqGv++PGe
  OMERI04G10280.2 25 IIEEVnKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGE 92
                     456777*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190132.0E-92492No hitNo description
PfamPF046894.9E-392892IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSKRWCLVP AGIVAAMADQ SNNMIIEEVN KGLNPGTIVL LVVATLLILF FVGNYALYMY  60
AQKTLPPRKK KPVSKKKLKR EKLKQGVSAP GE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891331e-131AK289133.1 Oryza sativa Japonica Group cDNA, clone: J090099A10, full insert sequence.
GenBankBT1291571e-131BT129157.1 Oryza sativa clone RRlibA00156 mRNA sequence.
GenBankBT1305261e-131BT130526.1 Oryza sativa clone RRlibC01181 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633416.13e-48DNA-binding protein S1FA1
SwissprotP425533e-49S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA0A0E0DDS88e-60A0A0E0DDS8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G11340.11e-47(Oryza glumipatula)
STRINGONIVA04G09620.11e-47(Oryza nivara)
STRINGORGLA04G0086800.11e-47(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563