PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G12420.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23229 Da    PI: 7.4365
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G12420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.69.3e-251058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi+fs+ gk+ye +
  OMERI04G12420.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVFSPLGKIYELA 58
                     8*********************************************965 PP
2K-box59.41.5e-2081172898
            K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      s+e++  +  qq++  L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le  +++iRs+K++++ ++ie l++ke  l+ +n  L++++
  OMERI04G12420.1  81 SNEQNIPQVIQQDVLLLRQEVDLLQNSLRYMYGErDISHMKLCELQSLESNLEVWVNNIRSTKMQIMSTEIEMLKNKEGILKAANDILQERI 172
                      4667778999***********************978****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-27175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.086161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-34160IPR002100Transcription factor, MADS-box
CDDcd002656.48E-37273No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-2381172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.91387179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVFSP LGKIYELATN  60
GNMQGLIERY KSNLPEAHAE SNEQNIPQVI QQDVLLLRQE VDLLQNSLRY MYGERDISHM  120
KLCELQSLES NLEVWVNNIR STKMQIMSTE IEMLKNKEGI LKAANDILQE RIIAQTSILD  180
VGGNMMIPQV PFQLTTESNY YF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15192190MEF2C
5f28_B3e-15192190MEF2C
5f28_C3e-15192190MEF2C
5f28_D3e-15192190MEF2C
6byy_A3e-15192190MEF2 CHIMERA
6byy_B3e-15192190MEF2 CHIMERA
6byy_C3e-15192190MEF2 CHIMERA
6byy_D3e-15192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194477.11e-120MADS-box transcription factor 26-like
RefseqXP_020194478.11e-120MADS-box transcription factor 26-like
SwissprotA2YQK93e-75MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G83e-75MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A0E0DER11e-147A0A0E0DER1_9ORYZ; Uncharacterized protein
STRINGOMERI04G11470.11e-148(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.14e-57AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]