PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G12590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 423aa    MW: 44853.9 Da    PI: 7.7292
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G12590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.53.4e-13161242286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ +++g+ +   s +qCk++++ l+k+yk +++   +       ++++f +l+
  OMERI04G12590.1 161 WSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWQFFGRLD 242
                      *************************************87888866222667**************99988876.......488888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-22159244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MVGEVETGLF LAAGWPAGRS LPPILSRSRF RPRPDLTHHL LGAGPSIPPA WPKSTPSPRR  60
VTTGSPLASI PPPPHRRPQT RSDRSPNPAA AAAEMDDDDA AASASPSPSP SPVASALPVA  120
DPVTVAAGPP SGLLALALPI QKQQHAASPN PGGGGGREDA WSEGATAALI DAWGERFVAL  180
GRGSLRHPQW QEVADAVSSR EGYAKAPKSD VQCKNRIDTL KKKYKIERAK PASSWQFFGR  240
LDDLLAPTFN QKPGGNGGGG GGGAGVNGRN PVPAALRVGF PQRSRTPLMP APVSAVKRRA  300
PSPEPSASSE SSDGFPPERE PAFPPLPLPP PPNGKRSRAD EGRGGGGGDR AQGLRELAQA  360
IRRFGEAYER VETAKLEQSA EMERRRLDFA SELESQRVQF FLNTQMELSQ SDDEEDDEEE  420
ESQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315930.0AL731593.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8551820.0CR855182.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0140O07, complete sequence.
GenBankCT8379700.0CT837970.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633896.11e-155trihelix transcription factor ASIL2
SwissprotQ9LJG85e-38ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0E0DET60.0A0A0E0DET6_9ORYZ; Uncharacterized protein
STRINGOMERI04G11670.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-37sequence-specific DNA binding transcription factors