PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G12720.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 306aa MW: 33041.9 Da PI: 8.8126

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G12720.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	47.8	2.5e-15	202	272	5	74
GRAS 5 LlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekns 74 l+cA+ +s+g++e+a+ +Larl e+asp+g +pm+ +aayfteA a r++r+++++++ ++ ++s+ s OMERI04G12720.2 202 FLTCADSLSAGNHEAANYYLARLGEMASPAGpTPMHSVAAYFTEAPALRIVRMWPHMFDWTRAPPSSSLAS 272 689*******************************************************9988777765444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	8.7E-13	202	272	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006536	Biological Process	glutamate metabolic process
GO:0004351	Molecular Function	glutamate decarboxylase activity
GO:0030170	Molecular Function	pyridoxal phosphate binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAWNCGGRTR GAAAAGGIGV QRGRRLGRRR LAWEDEGNGG SGGPRCCSSS SPSRLLVRSP 60 TARESLDHIS VNCTREVGAT SGCRSVHSRR SAPTRRARLL VPAQPRLCLD SPDWRQSATG 120 REWERERDDS DDRRGSWLAS GSWGSQAMMP PPSEFDARNG VPAPGQAEQE AIELVRALTA 180 CADGYFIFSE VERVSCERIA SFLTCADSLS AGNHEAANYY LARLGEMASP AGPTPMHSVA 240 AYFTEAPALR IVRMWPHMFD WTRAPPSSSL ASTRAAASTP GGGMRGSRVR YIRYYDAAFD 300 AVDTAG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111006	0.0	AK111006.1 Oryza sativa Japonica Group cDNA clone:002-174-F05, full insert sequence.
GenBank	AL606448	0.0	AL606448.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855179	0.0	CR855179.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0152K17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0DEV3	0.0	A0A0E0DEV3_9ORYZ; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	9e-14	GRAS family protein