PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G13070.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 446aa    MW: 48482.8 Da    PI: 4.6277
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G13070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3361.31.7e-110413372300
                      XXXXXXXXXXXXXXXXXXXXXX..XXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa..........tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpve 85 
                      +lkkrmwkdqmll++l++r+ ++ + + ++          + +++++ ++ ++rrk+m raQDg+L++Mlk+me+cna+GfvYgi++e+g pv+
  OMERI04G13070.1  41 DLKKRMWKDQMLLMKLEGRSGHEGALAAQDhrvvrgeeeaAAEEEEEPPEARYRRKAMLRAQDGVLRHMLKMMEACNARGFVYGIVDESGVPVS 134
                      8******************99977666555667777766555555669999******************************************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--H CS
             EIN3  86 gasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkel 179
                      g+sdsLr+WWk++v+fdr+gp+a+s +        g+ ++ +++ s  h l ++qD+tlgSLLsal+qhc+ppqr+fpl++g++pPWWPtG e+
  OMERI04G13070.1 135 GSSDSLRGWWKDDVAFDRAGPTALSGRG-----GRGSPRSPAAAASFLHGLLDIQDSTLGSLLSALIQHCEPPQRSFPLDRGLPPPWWPTGGEA 223
                      **************************94.....344455567899************************************************* PP

                      HHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXX CS
             EIN3 180 wwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqsp 272
                      wwg +g ++++qg+ppy+kphdlkkawk+s+L+avikh+sp++++ir+l++qsk+lq+kmsa++ +++++v+ qee++ ++   +         
  OMERI04G13070.1 224 WWGLQGeAQASQGPPPYRKPHDLKKAWKISLLSAVIKHLSPRFDQIRKLVWQSKRLQHKMSARDADTWSRVITQEEALSRHALRS-------LH 310
                      ****************************************************************************976543322.......22 PP

                      XXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
             EIN3 273 kvtlsceqkedvegkkeskikhvqavkt 300
                       + l+++++e +eg   ++ +h+ ++k+
  OMERI04G13070.1 311 ITPLDDDDDEPNEGPTPRE-SHADKRKR 337
                      2333333333333333333.44444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048739.3E-11741299No hitNo description
Gene3DG3DSA:1.10.3180.101.0E-63172306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.48E-56177302IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDDKGKAKAA DAAAAAEAAP EQEEEFFSDS ESGSESIEIA DLKKRMWKDQ MLLMKLEGRS  60
GHEGALAAQD HRVVRGEEEA AAEEEEEPPE ARYRRKAMLR AQDGVLRHML KMMEACNARG  120
FVYGIVDESG VPVSGSSDSL RGWWKDDVAF DRAGPTALSG RGGRGSPRSP AAAASFLHGL  180
LDIQDSTLGS LLSALIQHCE PPQRSFPLDR GLPPPWWPTG GEAWWGLQGE AQASQGPPPY  240
RKPHDLKKAW KISLLSAVIK HLSPRFDQIR KLVWQSKRLQ HKMSARDADT WSRVITQEEA  300
LSRHALRSLH ITPLDDDDDE PNEGPTPRES HADKRKREVG GGGGGGEEMQ LSLPADIDVV  360
PEADRSSIDE LMKLYYSCLQ GTDTDGGGGE QGKDVAAGAG GDGSVAPETV HVDDDDMLEG  420
LLGVAQVVDM SDFPDSPIWH WGSSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-491783034128Protein ETHYLENE INSENSITIVE 3
4zds_B3e-491783034128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551640.0CR855164.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0523F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635387.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ57e-90EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A0E0DF030.0A0A0E0DF03_9ORYZ; Uncharacterized protein
STRINGOMERI04G12190.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.16e-89EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]