PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G14330.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 172aa    MW: 18618.9 Da    PI: 6.9069
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G14330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP691.6e-211642466
              TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................s 66
                     ++a+caar+F+L++eLG+++d +t++WLl qakpai  +tgt                      
  OMERI04G14330.1  1 MPALCAARIFQLTRELGHKSDDETVQWLLMQAKPAIVTATGTgvgadirralppfpklrplqvA 64
                     9*****************************************6666666555555555555541 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136919.677139IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-15142IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPALCAARIF QLTRELGHKS DDETVQWLLM QAKPAIVTAT GTGVGADIRR ALPPFPKLRP  60
LQVASPPPPH VGCRRGAARR VCGVRRCHIG FATMFADHAA AAMPGLELGL SQDGHIGVLS  120
ARSLSQFYHQ VGDAGAAGQL PHPHHHRQHY QQQQEDGEDD RDDGESDEES GQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041330.0AP004133.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_G03.
GenBankAP0047680.0AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624510.22e-52LOW QUALITY PROTEIN: transcription factor TCP20
TrEMBLA0A0E0DFK01e-122A0A0E0DFK0_9ORYZ; Uncharacterized protein
STRINGORUFI01G24090.12e-74(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.15e-20TCP family protein