PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G14990.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 647aa    MW: 66820 Da    PI: 6.4262
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G14990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-10282338155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  OMERI04G14990.1 282 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 338
                      57*******************5444.2455535555.7799999*************98 PP
2AP251.33e-16381432155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  OMERI04G14990.1 381 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 432
                      89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-8282338IPR001471AP2/ERF domain
CDDcd000183.86E-16282348No hitNo description
SuperFamilySSF541712.94E-14282348IPR016177DNA-binding domain
SMARTSM003809.7E-22283352IPR001471AP2/ERF domain
PROSITE profilePS5103217.108283346IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-11283348IPR001471AP2/ERF domain
PRINTSPR003673.2E-6284295IPR001471AP2/ERF domain
CDDcd000183.14E-23381442No hitNo description
PfamPF008471.6E-10381432IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-18381442IPR016177DNA-binding domain
SMARTSM003804.3E-34382446IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-18382441IPR001471AP2/ERF domain
PROSITE profilePS5103219.401382440IPR001471AP2/ERF domain
PRINTSPR003673.2E-6422442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MASADNWLGF SLSGQGNPQN HQNGSPSAAA AAAAAAIDIS GSGDFYGLPT ADAHHIGMAS  60
EDASYGVMDA FNRGTHETQD WAMRGLDYGG GSSDLSMLVG SSGGGRRTVG DGGGEAPKLE  120
NFLDGNSFSD VDGQAAGGYL YSGSAVGGAG GYSNGGCGGG TIELSMIKTW LRSNQSQPQP  180
SPPQHADQDM RTDASASSYA CSDVLVGSCN GGGGGAGGTA SSHGQALALS MSTGSVAAAA  240
GGGAVVAAES SSSEIKRVDS PGGAVDGAVP RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL  300
WDNSCRREGQ SRKGRQGGYD KEDKAARAYD LAALKYWGTT TTTNFPMSNY EKELEEMKHM  360
TRQEYIAHLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG RVAGNKDIYL GTFSTEEEAA  420
EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL DSSTLPVGGA ARRLKEAEAA AGGGVIVSHL  480
ADGGVGGYYY GCPTIAFGGG GGQQPAPLAV HYPSYGQASG WCKPEQDAVI AAGHCATDLQ  540
HLHLGSGAAT HNFFQQPASS SAVYGNGNAF MMPMGAVVAA ADHGQSSAYG GGDESGRLVG  600
YDGVVDPYAA MRSAYELSQG SSSSSVSVAK AANGYPDNWS LPFNGMG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877260.0AK287726.1 Oryza sativa Japonica Group cDNA, clone: J065138E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635553.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A0E0DFV00.0A0A0E0DFV0_9ORYZ; Uncharacterized protein
STRINGOMERI04G14260.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-115AP2 family protein