PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G16620.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 407aa    MW: 43805.8 Da    PI: 8.7545
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G16620.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC727.1e-23157200245
              WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       ep+rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  OMERI04G16620.2 157 VEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEG 200
                      59***************************************996 PP
2QLQ58.22.5e-20104140137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      ++FT++Q+++L++Q+l+yK++aan+ vP+ Ll++i++
  OMERI04G16620.2 104 GPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRR 140
                      59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-12104140IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.888105140IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-14105139IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.136156200IPR014977WRC domain
PfamPF088793.5E-19158199IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLSSCGGHGH GNPRSLQEEH HGRCGEQQGG GGGGQEQEQD GFLVREARAS PPSPSSSSFL  60
GSTSSSCSGG GGGQMLSFSS PNGTAGLGLS SGGSMQGVLA RVRGPFTPTQ WMELEHQALI  120
YKHIAANVSV PSSLLLPIRR SLHPWGWGSF PPGSADVEPR RCRRTDGKKW RCSRDAVGDQ  180
KYCERHINRG RHRSRKHVEG RKATLTIAEP SMVIAAGVSS RGHTVARQKQ VKDSAATVSD  240
PFSRQSNRKF LEKQNVVDQL SPMDSFDFSS SQSSPNYDNV ALSPLKLHHD HDESYIGHGA  300
GSSSEKGSMM HESRLTVSKE TLDDGPLGEV FKRKNCQSAS TEILTEKWTE SPNLHCPSGI  360
LQMATKFNSM SSGNTVNSGG TAVENLITDN GYLTARMMNP HIVPTLL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1030550.0AK103055.1 Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615703.10.0growth-regulating factor 8
SwissprotQ6AWY10.0GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA0A0E0DGJ30.0A0A0E0DGJ3_9ORYZ; Uncharacterized protein
STRINGOMERI04G15900.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-37growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]