PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G17110.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 311aa    MW: 33167.9 Da    PI: 4.8754
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G17110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20130182156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      ++y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  OMERI04G17110.1 130 PKYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 182
                      79********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-15130181IPR001471AP2/ERF domain
CDDcd000187.00E-30130190No hitNo description
SMARTSM003805.5E-37131195IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23131190IPR016177DNA-binding domain
PROSITE profilePS5103224.144131189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32131190IPR001471AP2/ERF domain
PRINTSPR003671.8E-13132143IPR001471AP2/ERF domain
PRINTSPR003671.8E-13171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDFPGDAEDF SVEFIREHLL GGDAPVLPPA AVPAAAAYPP TSTMFLPQQQ RGYAGLTPQE  60
YVVDSAPAAE AAFRDDQHDP ADDVMIMFGG ERFPAVKPPP SSSSLTVTVP PSSFGSWAPP  120
AAAAVVDDFP KYRGVRQRPW GKFAAEIRDP KRRGSRVWLG TYDTPVEAAR AYDRAAFRMR  180
GAKAILNFPN EVGTRGAELW ATPPPTNKRK RQPEDDAAAA AADVEVIGVA NKAVKTEAPT  240
SAYSSSSLSS MSRDTTATTS STGTSTGSSE PTSFPVVTPS SWSWDQYWDG LPPLSPLSPH  300
PALGFPQLTV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26132194668ATERF1
3gcc_A2e-26132194668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635244.11e-149ethylene-responsive transcription factor ERF105
TrEMBLA0A0E0DGQ70.0A0A0E0DGQ7_9ORYZ; Uncharacterized protein
STRINGOMERI04G16360.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-32ethylene responsive element binding factor 5