PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G17630.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 706aa    MW: 73586.4 Da    PI: 5.8694
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G17630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS266.68.4e-823497053374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a + g+   a+++Larl+++  p g+p+ R a+y++ AL   la+      +  +++ ts+ +++ +l+a k fs++sP+l+f+++
  OMERI04G17630.1 349 DELAAAAKATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDALLLALAD-----GHHAATRLTSPLDVALKLTACKSFSDLSPVLQFANF 437
                      7899*************************************************.....66667777888889********************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++++   +++ +iDfd++ G+QW+++lq+La R      + p+l++T+++s++s++  el+ t+++L++fA+ lg+pfefn++   
  OMERI04G17630.1 438 TATQALLDEIASTtaSCIRVIDFDLGVGGQWASFLQELAHRYgsggVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAI--- 528
                      ********999887799************************96544459*****************************************9... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL   + +E++aV l +              + +++L+lvk+l Pk+vv ++  +d+++ +F ++fl++l+ +  l++sl+a  ++
  OMERI04G17630.1 529 NLDAFDPMELIAPTaDEVVAVILPVGCSART--------PLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFLNCLQSCLRLLESLDAA-GT 613
                      999999999966557*********9877776........5677*********************************************999.89 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      ++++++k+Er+l++++++++v  + ++      ++  Wr  l++aGF p pls+ a++qa++ll++v+++g++ve++ + l l+W++ +LvsvS
  OMERI04G17630.1 614 DADAASKIERFLIQPRVEDAVLGRRRA-----DKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVS 702
                      99*******************977665.....88899********************************************************* PP

             GRAS 372 aWr 374
                      aWr
  OMERI04G17630.1 703 AWR 705
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.011321685IPR005202Transcription factor GRAS
PfamPF035142.9E-79349705IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MRAAPFSADG NGAAELAGSI AALLWSEDKG GGGGGGGGSL LVEPRSVLDC RGSPSPPNST  60
STLSSSHGSG AADSISTGVA AVSEGSAAAA EATRWAAPGE HGGGELPPIP GALDVGFVAE  120
ESWDAMLGDA AAAAGQEQTF LNWIMAAPGD MEPQAPGLSQ QQLLANAAGF GFPLQHHPGG  180
VSSPAALASD LSSSGGRSLT SSSGSNSKAT SAFGLLSPEA ALQPPPATTA PFHNGADMKP  240
PLLGLPSPTL LLNQHQPTPA STLFMPLPSS DQQQQLLLQP PPKRHHSVPD NLFLLHNQPQ  300
PPPPAPAQCL PFPTLHSTVP FQLQPSLQHP RNAMKSTAAA AAQQQHLLDE LAAAAKATEV  360
GNSIGAREIL ARLNQQLPPI GKPFLRSASY LKDALLLALA DGHHAATRLT SPLDVALKLT  420
ACKSFSDLSP VLQFANFTAT QALLDEIAST TASCIRVIDF DLGVGGQWAS FLQELAHRYG  480
SGGVSLPMLK LTAFVSAASH HPLELHLTQD NLSQFAADLG IPFEFNAINL DAFDPMELIA  540
PTADEVVAVI LPVGCSARTP LPAMLQLVKQ LAPKIVVAID YGSDRSDLPF SQHFLNCLQS  600
CLRLLESLDA AGTDADAASK IERFLIQPRV EDAVLGRRRA DKAIAWRTVL TSAGFAPQPL  660
SNLAEAQADC LLKRVQVRGF HVEKRGAGLA LYWQRGELVS VSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-273477054375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066330.0AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAL6066470.0AL606647.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.10.0scarecrow-like protein 27
TrEMBLA0A0E0DGW80.0A0A0E0DGW8_9ORYZ; Uncharacterized protein
STRINGORGLA04G0182200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-86GRAS family protein