PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G17790.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 329aa MW: 35764.8 Da PI: 5.0508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G17790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.2e-13	152	198	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++++P+ K++Ka+iLe+++ Y+k L OMERI04G17790.1 152 KNHVISERRRREKLNEMFLILKSIVPSiH------KVDKASILEETIAYLKVL 198 57999********************66......*************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.834	149	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.52E-14	152	203	No hit	No description
SuperFamily	SSF47459	9.95E-18	152	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-16	153	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-11	153	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-14	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MSEGLITHNA IEEGQMVVAD ECVSNANRDP ITMEIDELYS IYEDLDLDLD LDSVRFLEDN 60 GWPVNPSSFQ LVPASSTEAV AAAAAANDID GVANSQVSCF MAWKSAKSNE MAEPVVTGIE 120 SQKLLKKVVD CGARMSAGRG SRAALTQESG IKNHVISERR RREKLNEMFL ILKSIVPSIH 180 KVDKASILEE TIAYLKVLEK RVKELESSGE PSHQRATETR QQRRCEITGK ELVSEIGVSG 240 GGDAGKEHHH VNVTVTDKVV LLEVQCRWKE LVMTRVFDAI KSLCLDVLSV QASALDGLLG 300 LKIQAKFACS GSVVSPGMIS EALQKAIGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	162	ERRRRE
2	158	163	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK111704	0.0	AK111704.1 Oryza sativa Japonica Group cDNA clone:J023013E24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635094.1	0.0	anthocyanin regulatory R-S protein
Swissprot	P13027	9e-78	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A0E0DGY5	0.0	A0A0E0DGY5_9ORYZ; Uncharacterized protein
STRING	OMERI04G17040.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	3e-33	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]