PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G17810.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 633aa MW: 69400.8 Da PI: 4.5946

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G17810.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.1e-08	340	369	3	37
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS- CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskK 37 ++h + ErrRR+++N+ f L++llP+ + K OMERI04G17810.1 340 KSHVISERRRREKLNEMFLILKSLLPSvR------K 369 5899**********************944......3 PP
2	HLH	39.7	8.5e-13	559	605	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++llP+ +K++Ka+iL +++ Y+k L OMERI04G17810.1 559 KSHVISERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 605 5899*********************7.....6*************977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.4E-31	28	161	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	7.85E-9	336	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.668	337	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	340	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.20E-8	340	388	No hit	No description
Pfam	PF00010	2.1E-5	341	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0048	343	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.037	556	605	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-17	559	622	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.39E-14	559	610	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.8E-16	560	617	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-10	560	605	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-14	562	611	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MASAPPVQEE ALQPGTNHFR SRLAAAVKTR KISNLEDLTA DQLVLRRSEQ LRELYYSLLS 60 GECDHRARKP VAALSPEDIA DTEWYYVVCM TYAFRPGQGL PGRSYASNRS VWLCNAQSAD 120 SKTFLRALLA KTIVCIPFMS GVLELGTTDP VSEDPNLVNR IVAYLKELQF PICLEVPSST 180 PSPNETEEAD IVFEGLIEEH QMVILQGEDE LGDVVVAECE TNGANPETIT METDEFYSLC 240 EELDLDLGSY QLFPTSARET VAAATATAND VDGVAYSRAS CFVSWKRANP AEKVVAVPMT 300 AGIESQKLLK KAVGGGTAWM SNIDGRGSVA ITTTPGSNIK SHVISERRRR EKLNEMFLIL 360 KSLLPSVRKV SEDPNLVNRI VAYLKELQFP ICLEVPSSTP SPNETEEADI VFEGLIEEHQ 420 MVILQGEDEL GDVVVAECET NGANPETITM ETDEFYSLCE ELDLDLGSYQ LFPTSARETV 480 AAATATANDV DGVAYSRASC FVSWKRANPA EKVVAVPMTA GIESQKLLKK AVGGGTAWMS 540 NIDGRGSVAI TTTPGSNIKS HVISERRRRE KLNEMFLILK SLLPSVRKVD KASILAETIT 600 YLKVLEKRVK ELESSSREPS RWCPTEIGQG KAP

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MASAPPVQEE ALQPGTNHFR SRLAAAVKTR KISNLEDLTA DQLVLRRSEQ LRELYYSLLS  60
GECDHRARKP VAALSPEDIA DTEWYYVVCM TYAFRPGQGL PGRSYASNRS VWLCNAQSAD  120
SKTFLRALLA KTIVCIPFMS GVLELGTTDP VSEDPNLVNR IVAYLKELQF PICLEVPSST  180
PSPNETEEAD IVFEGLIEEH QMVILQGEDE LGDVVVAECE TNGANPETIT METDEFYSLC  240
EELDLDLGSY QLFPTSARET VAAATATAND VDGVAYSRAS CFVSWKRANP AEKVVAVPMT  300
AGIESQKLLK KAVGGGTAWM SNIDGRGSVA ITTTPGSNIK SHVISERRRR EKLNEMFLIL  360
KSLLPSVRKV SEDPNLVNRI VAYLKELQFP ICLEVPSSTP SPNETEEADI VFEGLIEEHQ  420
MVILQGEDEL GDVVVAECET NGANPETITM ETDEFYSLCE ELDLDLGSYQ LFPTSARETV  480
AAATATANDV DGVAYSRASC FVSWKRANPA EKVVAVPMTA GIESQKLLKK AVGGGTAWMS  540
NIDGRGSVAI TTTPGSNIKS HVISERRRRE KLNEMFLILK SLLPSVRKVD KASILAETIT  600
YLKVLEKRVK ELESSSREPS RWCPTEIGQG KAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	564	569	ERRRRE
2	565	570	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB021080	0.0	AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653663.1	1e-155	PREDICTED: anthocyanin regulatory R-S protein-like
Refseq	XP_015635094.1	1e-155	anthocyanin regulatory R-S protein
Refseq	XP_015692285.1	1e-155	PREDICTED: anthocyanin regulatory R-S protein-like
Swissprot	P13526	2e-91	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A0E0DGY7	0.0	A0A0E0DGY7_9ORYZ; Uncharacterized protein
STRING	OMERI04G17060.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	4e-46	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]