PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G17820.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 425aa    MW: 45506.3 Da    PI: 4.4055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G17820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.2e-13252299355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++++P+        K++Ka+iL +++ Y+k+L+
  OMERI04G17820.1 252 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 299
                      5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-101354IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.859249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-15252303No hitNo description
SuperFamilySSF474591.57E-17252314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10253299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-17253308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-15255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTTMVLHADL PTSQSASIKT IVCVPFIMHG VLELGTTDPI SEDPALVDRI AASFWDTPPR  60
AAFSSEAGDA DIVVFEDLDH GNAAVEATTT TVPGEPHAVA GGEVAECEPN ADNDLEQITM  120
DDIGELYSLC EELDVVRPLD DDSSSWAVAD PWSSFQLVPT SSPAPAAEAT DVDDVVVAAL  180
DGSSIDGSCR PSPSSFVAWK RTADSDEVQA VPLISGEPPQ KLLKKAVAGA GAWMNNGDSS  240
AAAMTTQGSS IKNHVMSERR RREKLNEMFL ILKSVVPSIH KVDKASILAE TIAYLKELEK  300
RVEELESSSQ PSPCPLETRS RRKCREITGK KVSAGAKRKA PAPEVASDDD TDGERRHCVS  360
NVNVTIMDNK EVLLELQCQW KELLMTRVFD AIKGVSLDVL SVQASTSDGL LGLKIQAKVV  420
ISAAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257262ERRRRE
2258263RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU398600.0U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880379.10.0anthocyanin regulatory Lc protein isoform X2
SwissprotP135261e-98ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0E0DGY80.0A0A0E0DGY8_9ORYZ; Uncharacterized protein
STRINGOS04T0557800-000.0(Oryza sativa)
STRINGOBART04G21370.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.33e-24bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]