PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G18340.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 387aa MW: 44159.1 Da PI: 8.4591

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G18340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.7	7.1e-26	248	297	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl OMERI04G18340.1 248 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 297 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.19	232	317	IPR003035	RWP-RK domain
Pfam	PF02042	5.2E-21	249	297	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MDAAAAAVST LSALAVFAST LDHGAVRSVH GYKVYGRGGR RRWERWVERE FVLTPASCRE 60 VPAPVAPPRI LPAEWRGRPA YREGQVVAAG AWRCILAFDS AAAAAAPPRT PPPVLSPFLY 120 GDRIAYKQRT DSDARSLHDF DCLQNCFSLQ STPIILSLRS SVERNPRLMC VPSLYNDLEK 180 VFRFQNVEKI PKLMQCDSEE KLSSWDARDK SSDEVHASES DSDDDLQSGE EEKPTVQKQR 240 RANKKHIASI TLVDIAQYFH LPIREASRTL KIGVSILKRK CRQYNIPRWP HRKIKSLDSL 300 IQDLEYVIND GDDHDDTGDD VQQEKHKQTA EEKQEAIMAL TRRKQMLETE KETIQQIPAM 360 DLKVETKQFR EDVFKRRYRA KKDLAND

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MDAAAAAVST LSALAVFAST LDHGAVRSVH GYKVYGRGGR RRWERWVERE FVLTPASCRE  60
VPAPVAPPRI LPAEWRGRPA YREGQVVAAG AWRCILAFDS AAAAAAPPRT PPPVLSPFLY  120
GDRIAYKQRT DSDARSLHDF DCLQNCFSLQ STPIILSLRS SVERNPRLMC VPSLYNDLEK  180
VFRFQNVEKI PKLMQCDSEE KLSSWDARDK SSDEVHASES DSDDDLQSGE EEKPTVQKQR  240
RANKKHIASI TLVDIAQYFH LPIREASRTL KIGVSILKRK CRQYNIPRWP HRKIKSLDSL  300
IQDLEYVIND GDDHDDTGDD VQQEKHKQTA EEKQEAIMAL TRRKQMLETE KETIQQIPAM  360
DLKVETKQFR EDVFKRRYRA KKDLAND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	382	RRYRAKKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606628	0.0	AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634161.1	0.0	protein RKD5 isoform X1
TrEMBL	A0A0E0DH82	0.0	A0A0E0DH82_9ORYZ; Uncharacterized protein
STRING	OMERI04G17610.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-38	RWP-RK domain-containing protein