PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G18430.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 617aa    MW: 63611.8 Da    PI: 8.3322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G18430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05129151123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  OMERI04G18430.1 129 FVCEVCNKGFQREQNLQLHRRGH 151
                      89*******************88 PP
2zf-C2H211.50.00091180202123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  OMERI04G18430.1 180 WKCDKCSKRYAVQSDWKAHSKIC 202
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-6128151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0041129151IPR015880Zinc finger, C2H2-like
PfamPF121714.1E-5129151IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.094129151IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SMARTSM00355140180200IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQQQLA ASLTGVATAA PTAASSQGAP  60
PAAPPAKKKR NLPGNPSNQP KYPLRFQPCM HTYLFSEILS PLIGVLSFAD PDAEVIALSP  120
KTLLATNRFV CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK NPAQAQRRRV YLCPEPTCKW  180
KCDKCSKRYA VQSDWKAHSK ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESSRLPP  240
TSLSSLTSHL YGASNAGNMA LSLSQVGSHL TTSLQDGGGH HHHPSPELLR LGGAGGGGAG  300
AGGSSIAARL DHLLSPSGAS AFRPPQPAFF LNAAAAATGQ DFGDDAGNGQ HSFLQAKPFH  360
GLMQLPDLQG NGAGGPGAPG PNLFNLGFFA NNGNSSGSSH EHASQGLMSN DQFSGGAGGG  420
GGSDASAAGI FGGNFVGGDH VSPAGLYNDQ AAMLPQMSAT ALLQKAAQMG ATSSANGPGS  480
MFRGFVGSSP HMRPAAQHMD QSDAHLNDLM NSLAGGGVNA AAMFGGTNGG GVPGAGMFDP  540
RLCDIEHEVK FSQGGGGGGG AGAGTGDGTR DFLGVGGGGI VHGMSTPRGD HHQSSSDMSS  600
LEAEMKSASS FNGRRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32179245670Zinc finger protein JACKDAW
5b3h_F2e-32179245670Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207230.0AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
TrEMBLA0A0E0DH990.0A0A0E0DH99_9ORYZ; Uncharacterized protein
STRINGOMERI04G17710.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-73indeterminate(ID)-domain 12