PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G18510.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 435aa MW: 43932.1 Da PI: 9.8167

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G18510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	83	144	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss OMERI04G18510.1 83 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 144 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	79	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-33	85	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MQPTGTSTAP CVYHQGLGLV KPMEEMLMAA NAAAGANPNP AATAPSSVTG GALRGGGGGG 60 GGAPAVAGGA GAGSTERRAR PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY 120 WTEGGSLRNV PVGGGSRKNK RSSSSASAAS SASASTANSV VTSTSMSMSM SMASTAGGAS 180 KNPKLVHEGA QDLNLAFPHH GGLPTPGEFP AFPSLESSSV CNPGGAMGTN GRGGGALSAM 240 ELLRSTGCYM PLQVPMQMPA EYATPGFALG EFRAPPPPPQ SSQSLLGFSL DAHGSVGGPS 300 AAGFGSSAGL QGVPESTGRL LFPFEDLKPT VSSGTGGGGG GSGAGVDGGH QFDHGKEQQA 360 GGGGGPGGQD TSGFWNGMIG GGNGTSWGIV KRRMKGRTRL GRKKEKWTPI TMHASSEMSC 420 LTIVPKPESS SHEKH

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MQPTGTSTAP CVYHQGLGLV KPMEEMLMAA NAAAGANPNP AATAPSSVTG GALRGGGGGG  60
GGAPAVAGGA GAGSTERRAR PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY  120
WTEGGSLRNV PVGGGSRKNK RSSSSASAAS SASASTANSV VTSTSMSMSM SMASTAGGAS  180
KNPKLVHEGA QDLNLAFPHH GGLPTPGEFP AFPSLESSSV CNPGGAMGTN GRGGGALSAM  240
ELLRSTGCYM PLQVPMQMPA EYATPGFALG EFRAPPPPPQ SSQSLLGFSL DAHGSVGGPS  300
AAGFGSSAGL QGVPESTGRL LFPFEDLKPT VSSGTGGGGG GSGAGVDGGH QFDHGKEQQA  360
GGGGGPGGQD TSGFWNGMIG GGNGTSWGIV KRRMKGRTRL GRKKEKWTPI TMHASSEMSC  420
LTIVPKPESS SHEKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	403	KRRMKGRTRLGRKK
2	392	403	RMKGRTRLGRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL662954	0.0	AL662954.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637008.1	1e-165	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	1e-166	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0E0DHB2	0.0	A0A0E0DHB2_9ORYZ; Uncharacterized protein
STRING	OPUNC04G19770.2	1e-177	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-43	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]