PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G18510.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 380aa MW: 37792.8 Da PI: 8.6706

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G18510.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	76	137	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss OMERI04G18510.2 76 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 137 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	72	134	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	78	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDAAHWHQGL GLVKPMEEML MAANAAAGAN PNPAATAPSS VTGGALRGGG GGGGGAPAVA 60 GGAGAGSTER RARPQKEKAL NCPRCNSTNT KFCYYNNYSL QQPRYFCKTC RRYWTEGGSL 120 RNVPVGGGSR KNKRSSSSAS AASSASASTA NSVVTSTSMS MSMSMASTAG GASKNPKLVH 180 EGAQDLNLAF PHHGGLPTPG EFPAFPSLES SSVCNPGGAM GTNGRGGGAL SAMELLRSTG 240 CYMPLQVPMQ MPAEYATPGF ALGEFRAPPP PPQSSQSLLG FSLDAHGSVG GPSAAGFGSS 300 AGLQGVPEST GRLLFPFEDL KPTVSSGTGG GGGGSGAGVD GGHQFDHGKE QQAGGGGGPG 360 GQDTSGFWNG MIGGGNGTSW

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDAAHWHQGL GLVKPMEEML MAANAAAGAN PNPAATAPSS VTGGALRGGG GGGGGAPAVA  60
GGAGAGSTER RARPQKEKAL NCPRCNSTNT KFCYYNNYSL QQPRYFCKTC RRYWTEGGSL  120
RNVPVGGGSR KNKRSSSSAS AASSASASTA NSVVTSTSMS MSMSMASTAG GASKNPKLVH  180
EGAQDLNLAF PHHGGLPTPG EFPAFPSLES SSVCNPGGAM GTNGRGGGAL SAMELLRSTG  240
CYMPLQVPMQ MPAEYATPGF ALGEFRAPPP PPQSSQSLLG FSLDAHGSVG GPSAAGFGSS  300
AGLQGVPEST GRLLFPFEDL KPTVSSGTGG GGGGSGAGVD GGHQFDHGKE QQAGGGGGPG  360
GQDTSGFWNG MIGGGNGTSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028129	0.0	AB028129.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637008.1	1e-172	dof zinc finger protein 1 isoform X1
Swissprot	Q9SXG8	1e-173	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0E0DHB3	0.0	A0A0E0DHB3_9ORYZ; Uncharacterized protein
STRING	ORGLA04G0190600.1	1e-174	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	7e-43	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]