PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G19240.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 470aa    MW: 51975.6 Da    PI: 5.9994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G19240.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1659103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++l+++a +++G   W++I +++g ++t+ q++s+ qk+
  OMERI04G19240.2  59 REKWTEDEHKLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-1553109IPR009057Homeodomain-like
PROSITE profilePS5129419.9454108IPR017930Myb domain
TIGRFAMsTIGR015572.2E-1557106IPR006447Myb domain, plants
SMARTSM007173.8E-1358106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-95999IPR009057Homeodomain-like
PfamPF002491.9E-1459102IPR001005SANT/Myb domain
CDDcd001673.62E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MARFQETKAR NDQGPVADHV GHQNLMENLT DPLDSSGMDM MDEARIPKAR KPYTITKQRE  60
KWTEDEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVSSL LVIKESSGDN  120
CNSLGAAPSI QIPPPRPKRK PVHPYPRKLG STANKNVPAL KQLEKPQLQM QSLYDQDNGS  180
PTSVFTVPQI QADTLGSESG GSPTSTIDIE ERCPTPSIAT AELAVELPPT NDEEVKGNGD  240
HEEVTCDRSG VPVLRLFGKR VMVNDLHQMS APDAGNLQTV ADMEVDASAE TPTSGTGKFS  300
SHGAAEANTW NPWLTNTQQF LYYLPNGQFF SVHSALPCFT YHNEGVTCTQ FSNPQVVASD  360
QQHQHQTSEA VDYKGIQREG SWTESNTSSS SVPETATHNS DTTESYRNGN RNRNEDEMVP  420
SPDSRKCVSP GSNCRRGFVP YKRCVADSEV LLKSQAPQEE ADGEMTRLCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012090.0AK101209.1 Oryza sativa Japonica Group cDNA clone:J033031A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636284.10.0uncharacterized protein LOC4336779
TrEMBLA0A0E0DHN20.0A0A0E0DHN2_9ORYZ; Uncharacterized protein
STRINGOMERI04G18530.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-33MYB_related family protein