PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G20000.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 278aa MW: 32269 Da PI: 6.9408

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G20000.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.7	9.7e-26	22	107	1	86
trihelix 1 rWtkqevlaLiearremeerlrrg....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W qe+++Li+ar eme+++ ++ +++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk ++++ ++ ++cp+fd+l+ OMERI04G20000.1 22 QWGAQETRELIAARGEMERESAAAaaarRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 107 7******************975223369*********************************99999974....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0047	19	85	IPR001005	SANT/Myb domain
CDD	cd12203	1.21E-16	21	90	No hit	No description
Pfam	PF13837	2.9E-22	22	108	No hit	No description
PROSITE profile	PS50090	7.282	23	83	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEPGCGEGGG GGGGGRDERV PQWGAQETRE LIAARGEMER ESAAAAAARR SAKTLWEAVS 60 ARLRERGYRR TAEQCKCKWK NLVNRYKGKE TSDPENGRQC PFFDELHAVF TERARIMQQQ 120 LLESESGPSV KKKLKRPSGD LSSEDSDDEE DGGGDSGDEK PIRSRKRKTA DKRQQSQQMA 180 EKSRTSISSI HELLQDFLVQ QQRMDIQWHE MMERRSQERL VFEQEWRQSM QKLEQERLML 240 EHTWMEREEQ RRMREEARAE KRDALLTTLL NKVLQEDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	168	SRKRKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105720	0.0	AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence.
GenBank	AL606638	0.0	AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855228	0.0	CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880753.1	1e-138	uncharacterized protein LOC4336887
TrEMBL	A0A0E0DHY2	0.0	A0A0E0DHY2_9ORYZ; Uncharacterized protein
STRING	OMERI04G19290.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10688	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-27	Trihelix family protein