PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G21140.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 201aa    MW: 23348.5 Da    PI: 9.6406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G21140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51.1e-173783455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  OMERI04G21140.1 37 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 83
                     59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-193090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5273382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-2136109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-163687No hitNo description
PfamPF000105.8E-153883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-183988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTRKNMILSL EGEYTLEKDP MEARRATPTR RSRSAEFHNF SERRRRDRIN EKLKALQELL  60
PNCTKTDKVS MLDEAIDYLK SLQLQLQMLV MGKGMAPVVP PELQQYMHYI TADPSQIPPI  120
RPSEPRPFQI THATQQRQSN VESDFLSQMQ NLHPSEPPQN FLRPPKLQLY TPEQQRRGLA  180
SSSGHNGGWI TERNSSYNFL E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14146ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066890.0AK106689.1 Oryza sativa Japonica Group cDNA clone:002-114-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634978.11e-130transcription factor PIF1
RefseqXP_015634980.11e-130transcription factor PIF1
TrEMBLA0A0E0DIG41e-147A0A0E0DIG4_9ORYZ; Uncharacterized protein
STRINGOMERI04G20510.11e-137(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-27phytochrome interacting factor 3-like 5