PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G22900.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 531aa    MW: 55595.4 Da    PI: 7.6604
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G22900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17168217155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  OMERI04G22900.1 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 217
                      78*******************......55************************997 PP
2AP246.11.2e-14260310155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  OMERI04G22900.1 260 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 310
                      89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15168226IPR016177DNA-binding domain
PfamPF008476.3E-9168217IPR001471AP2/ERF domain
SMARTSM003801.8E-31169231IPR001471AP2/ERF domain
PROSITE profilePS5103217.701169225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-17169225IPR001471AP2/ERF domain
PfamPF008471.2E-10260310IPR001471AP2/ERF domain
CDDcd000183.78E-25260320No hitNo description
SuperFamilySSF541712.42E-18260320IPR016177DNA-binding domain
SMARTSM003803.0E-33261324IPR001471AP2/ERF domain
PROSITE profilePS5103216.489261318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17261318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MRNSSKATPT PTTSPAFRVL CSPPSAKSPR PNKGEDGGGE AEASHRRGKG DAMWDLNDSP  60
AAEAAPPPLS PSADDSGASS SSAAAVVEIP DDADDDSAAV VVVTRQFFPP AVPGGGGDPA  120
PGNARAGWLR LAGAAPPVAA TGGAATAAAA ASAAVSKKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFSLEDYE DDLKQMSNLT  240
KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEEEAARA  300
YDRAAIKCNG KDAVTNFDPS IYAGEFEPPG GCDCSSGQNL SLFAAAATGD TAEHNLDLSL  360
GSSAGSKRGN LDGGGDDEIT GGGGAGSDQR VPMAFDLDWQ TAAARSTKAK FDQNSNHPQM  420
PPVLQVTHLP FSPRHHHQFL SNGDPGTAGG LSLTIGAGMA GHWPPQQQQG WGNAGGMSWP  480
LPPHPPPPPT NAAAAATATA AAASSRFPPY IATQASTWLQ KNGFHSLTRP T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636848.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0E0DJ650.0A0A0E0DJ65_9ORYZ; Uncharacterized protein
STRINGORUFI04G29120.40.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-88AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]