PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G22900.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 569aa    MW: 60354.2 Da    PI: 8.7865
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G22900.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.1e-11168200138
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgt 38 
                      s+y+GV++++++grW+++I+d      + k+++lgkf +
  OMERI04G22900.4 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGKFHS 200
                      78*******************......55********86 PP
2AP2461.3e-14313363155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  OMERI04G22900.4 313 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 363
                      89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.604169278IPR001471AP2/ERF domain
SMARTSM003805.3E-18169284IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-6248279IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-8248278IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-18313373IPR016177DNA-binding domain
PfamPF008471.4E-10313363IPR001471AP2/ERF domain
CDDcd000185.18E-25313373No hitNo description
PROSITE profilePS5103216.489314371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-17314371IPR001471AP2/ERF domain
SMARTSM003803.0E-33314377IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MRNSSKATPT PTTSPAFRVL CSPPSAKSPR PNKGEDGGGE AEASHRRGKG DAMWDLNDSP  60
AAEAAPPPLS PSADDSGASS SSAAAVVEIP DDADDDSAAV VVVTRQFFPP AVPGGGGDPA  120
PGNARAGWLR LAGAAPPVAA TGGAATAAAA ASAAVSKKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGKFHS CPSCPYPPIL GNCYMRPPRL ARQLEPFFLY RARFRFLTMA  240
AFVTTEFAGG FDTAHAAARA YDRAAIKFRG VEADINFSLE DYEDDLKQMS NLTKEEFVHV  300
LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEEEA ARAYDRAAIK  360
CNGKDAVTNF DPSIYAGEFE PPAAATGDTA EHNLDLSLGS SAGSKRGNLD GGGDDEITGG  420
GGAGSDQRVP MAFDLDWQTA AARSTKAKFD QNSNHPQMPP VLQVTHLPFS PRHHHQFLSN  480
GDPGTAGGLS LTIGAGMAGH WPPQQQQGWG NAGGMSWPLP PHPPPPPTNA AAAATATAAA  540
ASSRFPPYIA TQASTWLQKN GFHSLTRPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636848.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0E0DJ680.0A0A0E0DJ68_9ORYZ; Uncharacterized protein
STRINGORUFI04G29120.40.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.27e-79AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]