PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G24630.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1695aa    MW: 188602 Da    PI: 6.0135
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G24630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.12.9e-22183284199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  OMERI04G24630.1 183 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 272
                      99***********************9*****86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OMERI04G24630.1 273 EKNQLLLGIRRA 284
                      99999****997 PP
2B370.12.9e-2210131114199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85  
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  OMERI04G24630.1 1013 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 1100
                       99***********************9*****86555544..8************************************************.. PP

                       SSSEE..EEEEE-S CS
               B3   86 grsefelvvkvfrk 99  
                       ++++ +l+++++r+
  OMERI04G24630.1 1101 WNEKNQLLLGIRRA 1114
                       8899999****997 PP
3Auxin_resp111.39.3e-37309392183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  OMERI04G24630.1 309 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 392
                      79*******************************986599******************************************985 PP
4Auxin_resp111.39.3e-3711391222183
       Auxin_resp    1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83  
                       aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  OMERI04G24630.1 1139 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 1222
                       79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-47168312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-41175298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-20182283No hitNo description
PROSITE profilePS5086312.224183285IPR003340B3 DNA binding domain
SMARTSM010191.4E-23183285IPR003340B3 DNA binding domain
PfamPF023622.0E-20183284IPR003340B3 DNA binding domain
PfamPF065073.9E-32309392IPR010525Auxin response factor
SuperFamilySSF542775.4E-6762837No hitNo description
PROSITE profilePS5174521.572766854IPR000270PB1 domain
SuperFamilySSF1019362.22E-479981142IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-4110051128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-2010121113No hitNo description
SMARTSM010191.4E-2310131115IPR003340B3 DNA binding domain
PfamPF023622.0E-2010131114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.22410131115IPR003340B3 DNA binding domain
PfamPF065073.9E-3211391222IPR010525Auxin response factor
PfamPF023094.0E-715891680IPR033389AUX/IAA domain
SuperFamilySSF542773.63E-715921671No hitNo description
PROSITE profilePS5174524.03715961680IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1695 aa     Download sequence    Send to blast
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEEKKCL NSELWHACAG  60
PLVCLPTVGT RVVYFPQGHS EQVAASTNKE VEGHIPNYPN LPAQLICQLH DVTMHADVET  120
DEVYAQMTLQ PLNPVRRLGF LHDVCSAELL MVWRSEIFYA QEQNDAYLPA EMGIMSKQPT  180
NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD IEWKFRHIFR  240
GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRASRPQTV MPSSVLSSDS  300
MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLSKYI KAVFHTRISV GMRFRMLFET  360
EESSVRRYMG TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM  420
YPSLFPLRVK HPWYSGVASL HDDSNALMWL RGVAGEGGFQ SLNFQSPGIG SWGQQRLHPS  480
LLSSDHDQYQ AVVAAAAASQ SGGYLKQQFL HLQQPMQSPQ EHCNLNPLLQ QQILQQASQQ  540
QIINPDAQNI QTMLSPSAIQ QQLQQLQQMQ QVQNDQKQKI QPDQSYQVPT SAVLPSPTSL  600
PSHLREKFGF SDPNANSSSF ITSSSSDNML DSSFLQGSSK AVDLSRFNQP VASEQQQQQQ  660
AWKQKFMGSQ SVSFGGSVLH NSPTSKDGSV ENKIGRDVQN QSLFSPQVDS SSLLYNMVPN  720
LTSNVSDGNL STIPSGSTYL QNAMYGCLDD SSGLLQNTGE NDPATRTFVK VYKSGSVGRS  780
LDITRFSNYA ELREELGQMF GIKGQLDDPD RSGWQLVFVD RENDVLLLGD DPWELRVCAS  840
LVWSEEEEMS SSSAASIGPP QPPPPPAPPE EGGWLEKKCL NSELWHACAG PLVCLPTVGT  900
RVVYFPQGHS EQVAASTNKE VEGHIPNYPN LPAQLICQLH DVTMHADVET DEVYAQMTLQ  960
PLNPVRRLGF LHDVCSAELL MVWRSEIFYA QEQNDAYLPA EMGIMSKQPT NYFCKTLTAS  1020
DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD IEWKFRHIFR GQPKRHLLTT  1080
GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRASRPQTV MPSSVLSSDS MHIGLLAAAA  1140
HAAATNSRFT IFYNPRASPS EFVIPLSKYI KAVFHTRISV GMRFRMLFET EESSVRRYMG  1200
TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM YPSLFPLRVK  1260
HPWYSGVASL HDDSNALMWL RGVAGEGGFQ SLNFQSPGIG SWGQQRLHPS LLSSDHDQYQ  1320
AVVAAAAASQ SGGYLKQQFL HLQQPMQSPQ EHCNLNPLLQ QQILQQASQQ QIINPDAQNI  1380
QTMLSPSAIQ QQLQQLQQMQ QVQNDQKQKI QPDQSYQVPT SAVLPSPTSL PSHLREKFGF  1440
SDPNANSSSF ITSSSSDNML DSSFLQGSSK AVDLSRFNQP VASEQQQQQQ AWKQKFMGSQ  1500
SVSFGGSVLH NSPTSKDGSV ENKIGRDVQN QSLFSPQVDS SSLLYNMVPN LTSNVSDGNL  1560
STIPSGSTYL QNAMYGCLDD SSGLLQNTGE NDPATRTFVK VYKSGSVGRS LDITRFSNYA  1620
ELREELGQMF GIKGQLDDPD RSGWQLVFVD RENDVLLLGD DPWESFVNSV WYIKILSPED  1680
VHKMGKQGND PRYLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-15046124347388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712980.0AB071298.1 Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636872.10.0auxin response factor 12 isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A0E0DJY20.0A0A0E0DJY2_9ORYZ; Auxin response factor
STRINGOMERI04G24270.50.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6